| Sequence ID | dm3.chrX |
|---|---|
| Location | 19,253,217 – 19,253,336 |
| Length | 119 |
| Max. P | 0.956344 |
| Location | 19,253,217 – 19,253,336 |
|---|---|
| Length | 119 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 76.93 |
| Shannon entropy | 0.39150 |
| G+C content | 0.47565 |
| Mean single sequence MFE | -30.85 |
| Consensus MFE | -16.91 |
| Energy contribution | -17.16 |
| Covariance contribution | 0.25 |
| Combinations/Pair | 1.08 |
| Mean z-score | -2.44 |
| Structure conservation index | 0.55 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.63 |
| SVM RNA-class probability | 0.956344 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 19253217 119 - 22422827 CCCCAACUUUAUUUGAAAACUCCAACGCGCCAGCUACAGCUUCAGUUCCAGCUCCACAGAGCUCUGCCUUUCCGCUUGGGCCAUAAUUGUUGUCAAAACGAGUUUUCGAUGAAGUGGUU- ..(((.(((((((.((((((((....((....)).(((((.........(((((....)))))..((((........)))).......)))))......))))))))))))))))))..- ( -33.70, z-score = -2.56, R) >droEre2.scaffold_4690 9505124 93 - 18748788 ---------------------------CCCCAACUUUAUUUGAAACUCCAACUCCACAGAGCUCUGCCUUUCCGCUUGGGCCAUAAUUGUUGUCAAAACGAGUUUUCGAUGAAGUGGUUU ---------------------------..(((.(((((((.(((((((..........(.((((.((......))..)))))......(((.....)))))))))).))))))))))... ( -23.70, z-score = -2.14, R) >droSec1.super_8 1545912 116 - 3762037 CCCCAACUUUAUUUG-AAACUCCAA--CGCCAGCUCCAGCUCCAGCUUCAGCUCCACAGAGCUCUGCCUUUCCGCUUGGGCCAUAAUUGUUGUCAAAACGAGUUUUCGAUGAAGUGGUU- ..(((.(((((((.(-((((((...--.....((((.(((....((...(((((....)))))..))......))).)))).......(((.....)))))))))).))))))))))..- ( -33.00, z-score = -2.53, R) >droSim1.chrX 14877832 116 - 17042790 ---CCCCAACUUUAUUUGAAACUCCAACGCCAGCUCCAGCUCCAGCUUCAGCUCCACAGAGCUCUGCCUUUCCGCUUGGGCCAUAAUUGUUGUCAAAACGAGUUUUCGAUGAAGUGGUU- ---..(((.(((((((.(((((((........((((.(((....((...(((((....)))))..))......))).)))).......(((.....)))))))))).))))))))))..- ( -33.00, z-score = -2.53, R) >consensus ___CAACUUUAUUUG_AAACUCCAA__CGCCAGCUCCAGCUCCAGCUCCAGCUCCACAGAGCUCUGCCUUUCCGCUUGGGCCAUAAUUGUUGUCAAAACGAGUUUUCGAUGAAGUGGUU_ ...............................((((..(((....)))..))))(((((((((((.((((........)))).......(((.....)))))))))).......))))... (-16.91 = -17.16 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 02:00:09 2011