| Sequence ID | dm3.chrX |
|---|---|
| Location | 19,219,786 – 19,219,876 |
| Length | 90 |
| Max. P | 0.999134 |
| Location | 19,219,786 – 19,219,876 |
|---|---|
| Length | 90 |
| Sequences | 3 |
| Columns | 90 |
| Reading direction | forward |
| Mean pairwise identity | 87.04 |
| Shannon entropy | 0.18086 |
| G+C content | 0.29630 |
| Mean single sequence MFE | -22.73 |
| Consensus MFE | -17.99 |
| Energy contribution | -18.10 |
| Covariance contribution | 0.11 |
| Combinations/Pair | 1.05 |
| Mean z-score | -3.81 |
| Structure conservation index | 0.79 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 3.16 |
| SVM RNA-class probability | 0.997687 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 19219786 90 + 22422827 ACUAAGCCCCGAUUAUAGUAACAUAAUAAAUUAUGACCAAAUUUGUGUAACAAAUUUGUCGAUUUGUGGAAAUCUCAAAGGGGCUUAAUG ..((((((((((.........(((((....)))))..((((((((.....))))))))))(((((....))))).....))))))))... ( -25.10, z-score = -4.10, R) >droSim1.chrX 14859490 90 + 17042790 AAUAAACCCCAAUUAUAGUAACUUAAUAAUUGAUGCUCAAAUUUGAUUAACAAAUUUGUCGAUUUGUGUAACUCUAAAAGGGGCUUAAUG ..(((.((((..(((.(((.((.....((((((....((((((((.....))))))))))))))...)).))).)))..)))).)))... ( -19.70, z-score = -3.31, R) >droSec1.super_8 1514317 90 + 3762037 AAUAAGCCCCAAUUAUAGUAACUUAGUAAAGUAUUGUCAAAUUUGAUUAACAAAUUUGUCCAUUUGUGUAACUCUAAAAGGGGCUUAAUG ..((((((((..(((.(((.((((....))))...(.((((((((.....)))))))).)..........))).)))..))))))))... ( -23.40, z-score = -4.01, R) >consensus AAUAAGCCCCAAUUAUAGUAACUUAAUAAAUUAUGAUCAAAUUUGAUUAACAAAUUUGUCGAUUUGUGUAACUCUAAAAGGGGCUUAAUG ..((((((((.((((........))))..........((((((((.....)))))))).....................))))))))... (-17.99 = -18.10 + 0.11)
| Location | 19,219,786 – 19,219,876 |
|---|---|
| Length | 90 |
| Sequences | 3 |
| Columns | 90 |
| Reading direction | reverse |
| Mean pairwise identity | 87.04 |
| Shannon entropy | 0.18086 |
| G+C content | 0.29630 |
| Mean single sequence MFE | -24.17 |
| Consensus MFE | -19.62 |
| Energy contribution | -20.40 |
| Covariance contribution | 0.78 |
| Combinations/Pair | 1.04 |
| Mean z-score | -4.58 |
| Structure conservation index | 0.81 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 3.66 |
| SVM RNA-class probability | 0.999134 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 19219786 90 - 22422827 CAUUAAGCCCCUUUGAGAUUUCCACAAAUCGACAAAUUUGUUACACAAAUUUGGUCAUAAUUUAUUAUGUUACUAUAAUCGGGGCUUAGU .((((((((((.....(((((....)))))((((((((((.....))))))).)))........................)))))))))) ( -26.00, z-score = -4.89, R) >droSim1.chrX 14859490 90 - 17042790 CAUUAAGCCCCUUUUAGAGUUACACAAAUCGACAAAUUUGUUAAUCAAAUUUGAGCAUCAAUUAUUAAGUUACUAUAAUUGGGGUUUAUU ...((((((((..(((.(((.((.(.....).((((((((.....))))))))...............)).))).)))..)))))))).. ( -21.80, z-score = -4.13, R) >droSec1.super_8 1514317 90 - 3762037 CAUUAAGCCCCUUUUAGAGUUACACAAAUGGACAAAUUUGUUAAUCAAAUUUGACAAUACUUUACUAAGUUACUAUAAUUGGGGCUUAUU ...((((((((..(((.(((.((.(....)..((((((((.....))))))))...............)).))).)))..)))))))).. ( -24.70, z-score = -4.71, R) >consensus CAUUAAGCCCCUUUUAGAGUUACACAAAUCGACAAAUUUGUUAAUCAAAUUUGACCAUAAUUUAUUAAGUUACUAUAAUUGGGGCUUAUU ...((((((((..(((.(((.((.(.....).((((((((.....))))))))...............)).))).)))..)))))))).. (-19.62 = -20.40 + 0.78)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 02:00:06 2011