Locus 15469

Sequence ID dm3.chrX
Location 19,217,359 – 19,217,463
Length 104
Max. P 0.765854
window21324 window21325

overview

Window 4

Location 19,217,359 – 19,217,461
Length 102
Sequences 5
Columns 117
Reading direction reverse
Mean pairwise identity 77.06
Shannon entropy 0.39794
G+C content 0.37080
Mean single sequence MFE -25.58
Consensus MFE -15.76
Energy contribution -16.16
Covariance contribution 0.40
Combinations/Pair 1.22
Mean z-score -1.62
Structure conservation index 0.62
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.62
SVM RNA-class probability 0.765854
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chrX 19217359 102 - 22422827
GUAAUUGUUC--------UUUUUUUUUACGAGCGACCAAACGAUC----GUUAAUUGUGGUUAACCCU-AGAAAACCUCUUAGGGGUUGCUACGAGUGA--GGACUCAAUACUUAAU
(((...((((--------((.......((((.((......)).))----))...(((((((...((((-(((.....)).)))))...)))))))..))--))))....)))..... ( -25.20, z-score =  -1.60, R)
>droEre2.scaffold_4690 9474233 104 - 18748788
GUAAUUGUUUUU-----AUUUUGUUUUAAGAGCGGCCCAACGAUCGUGGGUUAAUUGUGGUUAACCCU-AGAAAACCAUUUAGGGGCUGCUAUGAGUGA--GGAUUCAGGAU-----
......((((((-----((((.........((((((((.((....))((((((((....)))))))).-..............))))))))..))))))--)))).......----- ( -28.70, z-score =  -1.61, R)
>droYak2.chrX 9662989 92 + 21770863
GUAAUAGUAAUUU---AAUUUAAUUUUAUGAGCCGCCUAACGAUC----GUUAAUUGUGGUUAGCCCUAAAAAAACCUCAUAGGGGUUGCUAGGAGUGA------------------
((((...(((...---...)))...)))).((((((.((((....----))))...)))))).((((((....(((((.....)))))..)))).))..------------------ ( -18.90, z-score =  -0.43, R)
>droSec1.super_8 1510807 110 - 3762037
GUAAUUGUUCUUUUAUUUUUUUUUUUUACGAGCGACCUAACGAUC----GUUAAUUGUGGUUAACCCU-AGAAAAUCUCUUAGGGGUUGCUACGAGUGA--GGAUUCAUUACCAAAU
(((((.((((((..................(((((.(....).))----)))..(((((((...((((-(((.....)).)))))...)))))))..))--))))..)))))..... ( -26.90, z-score =  -2.18, R)
>droSim1.chrX 14857067 110 - 17042790
GUAAUUGUUCUUUUA--UUUUUUUUUUACGAGCGACCUAACGAUC----GUUAAUUGUGGUUAACCCU-AGAAAACCUCUUAGGUGUUGCUACGAGUGAGGGGAUUCAUUACCUAAU
(((((.(((((((((--(((..........(((((.(....).))----)))....(((((.((((((-(((.....)).)))).))))))))))))))))))))..)))))..... ( -28.20, z-score =  -2.27, R)
>consensus
GUAAUUGUUCUUU____AUUUUUUUUUACGAGCGACCUAACGAUC____GUUAAUUGUGGUUAACCCU_AGAAAACCUCUUAGGGGUUGCUACGAGUGA__GGAUUCAUUAC__AAU
.........................((((.(((((((............((((((....))))))(((.(((.....))).))))))))))....)))).................. (-15.76 = -16.16 +   0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 5

Location 19,217,361 – 19,217,463
Length 102
Sequences 5
Columns 117
Reading direction reverse
Mean pairwise identity 78.18
Shannon entropy 0.38134
G+C content 0.37736
Mean single sequence MFE -26.34
Consensus MFE -15.76
Energy contribution -16.16
Covariance contribution 0.40
Combinations/Pair 1.22
Mean z-score -1.61
Structure conservation index 0.60
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.29
SVM RNA-class probability 0.630886
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chrX 19217361 102 - 22422827
UCGUAAUUGUUC--------UUUUUUUUUACGAGCGACCAAACGAUC----GUUAAUUGUGGUUAACCCU-AGAAAACCUCUUAGGGGUUGCUACGAGUGA--GGACUCAAUACUUA
..(((...((((--------((.......((((.((......)).))----))...(((((((...((((-(((.....)).)))))...)))))))..))--))))....)))... ( -25.50, z-score =  -1.37, R)
>droEre2.scaffold_4690 9474233 106 - 18748788
UCGUAAUUGUUUUU-----AUUUUGUUUUAAGAGCGGCCCAACGAUCGUGGGUUAAUUGUGGUUAACCCU-AGAAAACCAUUUAGGGGCUGCUAUGAGUGA--GGAUUCAGGAU---
((((..((((((((-----(........)))))))))....))))((.((((((..(..((((...((((-(((......)))))))...))))..)....--.)))))).)).--- ( -29.00, z-score =  -1.42, R)
>droYak2.chrX 9662989 94 + 21770863
UCGUAAUAGUAAUUU---AAUUUAAUUUUAUGAGCCGCCUAACGAUC----GUUAAUUGUGGUUAGCCCUAAAAAAACCUCAUAGGGGUUGCUAGGAGUGA----------------
((((((...(((...---...)))...))))))(((((.((((....----))))...)))))..((((((....(((((.....)))))..)))).))..---------------- ( -21.50, z-score =  -1.12, R)
>droSec1.super_8 1510809 110 - 3762037
UCGUAAUUGUUCUUUUAUUUUUUUUUUUUACGAGCGACCUAACGAUC----GUUAAUUGUGGUUAACCCU-AGAAAAUCUCUUAGGGGUUGCUACGAGUGA--GGAUUCAUUACCAA
..(((((.((((((..................(((((.(....).))----)))..(((((((...((((-(((.....)).)))))...)))))))..))--))))..)))))... ( -27.20, z-score =  -2.04, R)
>droSim1.chrX 14857069 110 - 17042790
UCGUAAUUGUUCUUUUA--UUUUUUUUUUACGAGCGACCUAACGAUC----GUUAAUUGUGGUUAACCCU-AGAAAACCUCUUAGGUGUUGCUACGAGUGAGGGGAUUCAUUACCUA
..(((((.(((((((((--(((..........(((((.(....).))----)))....(((((.((((((-(((.....)).)))).))))))))))))))))))))..)))))... ( -28.50, z-score =  -2.13, R)
>consensus
UCGUAAUUGUUCUUU____AUUUUUUUUUACGAGCGACCUAACGAUC____GUUAAUUGUGGUUAACCCU_AGAAAACCUCUUAGGGGUUGCUACGAGUGA__GGAUUCAUUAC__A
...........................((((.(((((((............((((((....))))))(((.(((.....))).))))))))))....))))................ (-15.76 = -16.16 +   0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 02:00:01 2011