| Sequence ID | dm3.chrX |
|---|---|
| Location | 19,204,920 – 19,204,976 |
| Length | 56 |
| Max. P | 0.993166 |
| Location | 19,204,920 – 19,204,976 |
|---|---|
| Length | 56 |
| Sequences | 5 |
| Columns | 58 |
| Reading direction | forward |
| Mean pairwise identity | 67.26 |
| Shannon entropy | 0.58016 |
| G+C content | 0.31344 |
| Mean single sequence MFE | -7.36 |
| Consensus MFE | -3.58 |
| Energy contribution | -3.66 |
| Covariance contribution | 0.08 |
| Combinations/Pair | 1.43 |
| Mean z-score | -2.26 |
| Structure conservation index | 0.49 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.59 |
| SVM RNA-class probability | 0.993166 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 19204920 56 + 22422827 UGAGUAAAGUGCAUACUAAAUGUAGUAUGAAC-UCAUCAUGAAAUCAUCCCCAAACA- (((((...((((.(((.....)))))))..))-))).....................- ( -9.40, z-score = -2.06, R) >droSim1.chrX 14844453 54 + 17042790 UGAGUAAAAUGCAUACUAAAUGUAGUAUGAAC-UCUUUA--AAAUCAUCCCCAAACG- .((((......(((((((....))))))).))-))....--................- ( -8.40, z-score = -3.44, R) >droSec1.super_8 1498306 54 + 3762037 UGAGUAAAAUGCAUACUAAAUUUAGUAUGAAC-UCUUUA--AAAUCAUCCCCAAACG- .((((......(((((((....))))))).))-))....--................- ( -8.40, z-score = -3.96, R) >droEre2.scaffold_4690 9462506 55 + 18748788 UGAGUAAAAUGCAUACUAAAGAUAGUAUCAAC-UCCUUA--AAAUCAUACCCAAAACG .((((....((.((((((....))))))))))-))....--................. ( -6.30, z-score = -2.93, R) >droVir3.scaffold_12970 9390547 52 + 11907090 -----UGAGAGUUUUCUGUCCUUUCUAAAAUCGUUAUUGGGAUAUCAUUUAUAGUCA- -----...........((((((...(((.....)))..)))))).............- ( -4.30, z-score = 1.10, R) >consensus UGAGUAAAAUGCAUACUAAAUGUAGUAUGAAC_UCAUUA__AAAUCAUCCCCAAACA_ ...........(((((((....)))))))............................. ( -3.58 = -3.66 + 0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:59:57 2011