| Sequence ID | dm3.chrX |
|---|---|
| Location | 19,202,695 – 19,202,787 |
| Length | 92 |
| Max. P | 0.936241 |
| Location | 19,202,695 – 19,202,787 |
|---|---|
| Length | 92 |
| Sequences | 3 |
| Columns | 93 |
| Reading direction | forward |
| Mean pairwise identity | 84.27 |
| Shannon entropy | 0.20736 |
| G+C content | 0.31463 |
| Mean single sequence MFE | -17.18 |
| Consensus MFE | -10.94 |
| Energy contribution | -10.50 |
| Covariance contribution | -0.44 |
| Combinations/Pair | 1.11 |
| Mean z-score | -2.89 |
| Structure conservation index | 0.64 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.40 |
| SVM RNA-class probability | 0.936241 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 19202695 92 + 22422827 CGAUCUUGAACUACUGCUACUACAUAUGUUUUCUAGCCUUGGUUUCGAAAAAAAAAAAAACAUUUAGCUCUAGGCCAAAUUAAUAAAAAUUU- .....(((..(((..((((.........(((((.(((....)))..))))).............))))..)))..)))..............- ( -10.85, z-score = -0.34, R) >droSim1.chrX 14842313 81 + 17042790 UGAUCUUGAACUACUGCUA-----UAUGUUUUCUAGCCUUGGCUUCGAAUAAAA------CGUUUAGCUCUAGGCCAAAUCAAUAAAAAAAU- ((((.(((..(((..((((-----.(((((((..(((....)))......))))------))).))))..)))..)))))))..........- ( -20.10, z-score = -3.94, R) >droSec1.super_8 1496199 82 + 3762037 UGAUCUUGAACUACUGCUA-----UAUGUUUUCUAGCCUUGGCUUCGAAUAAAA------CGUUUAGCUCUAGGUCAAAUCAAUAAAAAAAAU ((((.((((.(((..((((-----.(((((((..(((....)))......))))------))).))))..))).))))))))........... ( -20.60, z-score = -4.38, R) >consensus UGAUCUUGAACUACUGCUA_____UAUGUUUUCUAGCCUUGGCUUCGAAUAAAA______CGUUUAGCUCUAGGCCAAAUCAAUAAAAAAAU_ .(((.(((..(((..((((...........(((.(((....)))..)))...............))))..)))..))))))............ (-10.94 = -10.50 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:59:57 2011