| Sequence ID | dm3.chrX |
|---|---|
| Location | 19,200,893 – 19,200,992 |
| Length | 99 |
| Max. P | 0.829406 |
| Location | 19,200,893 – 19,200,992 |
|---|---|
| Length | 99 |
| Sequences | 5 |
| Columns | 101 |
| Reading direction | forward |
| Mean pairwise identity | 69.62 |
| Shannon entropy | 0.55196 |
| G+C content | 0.43162 |
| Mean single sequence MFE | -26.69 |
| Consensus MFE | -12.12 |
| Energy contribution | -13.08 |
| Covariance contribution | 0.96 |
| Combinations/Pair | 1.38 |
| Mean z-score | -1.64 |
| Structure conservation index | 0.45 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.83 |
| SVM RNA-class probability | 0.829406 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 19200893 99 + 22422827 UUUGGUAGCCACUGUUUGCCACGGUUUGUGGCUCUACAUACAUACGUACAUAC-AUUUGUAUCUAUGAGGCGAAAUCGCUCCGUUUGA-GAGGAGUAGCCA ..((((.(((..(((..(((((.....)))))...)))..((((.(((((...-...))))).)))).)))......(((((......-..))))).)))) ( -33.30, z-score = -2.71, R) >droSim1.chrX 14840572 100 + 17042790 UUUGGUAGCCACUGUUUGCCACGGUUUGUGGUUCUACAUACAUACAUACAUCCUAUGAGUAUCUAUGAGGCGAAAUCGCUCCGUUUGA-GAGGAGUAGCCA ..((((.(((..(((..(((((.....)))))...)))..((((.((((.((....)))))).)))).)))......(((((......-..))))).)))) ( -29.50, z-score = -1.54, R) >droSec1.super_8 1494569 99 + 3762037 UUUGGUAGCCACUGUUUGCCACGGUUUGUGGUUCUACAUACAUACAUACAUCC-AUAUGUAUCUAUGAGGCGAAAUCGCUCCGUUUGA-GAGGAGUAGUUA .......(((..(((..(((((.....)))))...)))..((((.((((((..-..)))))).)))).)))..(((..((((......-..))))..))). ( -29.00, z-score = -1.86, R) >droYak2.chrX 9645920 79 - 21770863 UUUGGUAGCCACUGUGUGCCUCGUUUUGUGGUUCUAUCGAC---------------------UUAUAAAGUGAAAUCGCUCCGUUUGA-GAGGAGAAGCGA .(((((((((((...............))))..))))))).---------------------.............(((((.(.(((..-..)))).))))) ( -15.86, z-score = 0.74, R) >droWil1.scaffold_181130 998016 91 + 16660200 UUUUUCACUCCUUGUUUUCCAC--UCCGUGGACAGACAUACAUAUGUACAUAU-----GUGUGUAUGUAGGUAGAUCGAUUCCUCUGUUGAAGAAAAA--- .(((((.((((.((((((((((--...))))).)))))((((((..(((....-----)))..)))))))).)).(((((......))))).))))).--- ( -25.80, z-score = -2.86, R) >consensus UUUGGUAGCCACUGUUUGCCACGGUUUGUGGUUCUACAUACAUACAUACAUAC_AU__GUAUCUAUGAGGCGAAAUCGCUCCGUUUGA_GAGGAGUAGCCA .......(((..(((..(((((.....)))))...)))..((((.((((.........)))).)))).)))......(((((.........)))))..... (-12.12 = -13.08 + 0.96)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:59:56 2011