| Sequence ID | dm3.chrX |
|---|---|
| Location | 19,193,665 – 19,193,818 |
| Length | 153 |
| Max. P | 0.914994 |
| Location | 19,193,665 – 19,193,818 |
|---|---|
| Length | 153 |
| Sequences | 4 |
| Columns | 191 |
| Reading direction | forward |
| Mean pairwise identity | 61.11 |
| Shannon entropy | 0.57792 |
| G+C content | 0.48222 |
| Mean single sequence MFE | -48.45 |
| Consensus MFE | -23.08 |
| Energy contribution | -25.14 |
| Covariance contribution | 2.06 |
| Combinations/Pair | 1.18 |
| Mean z-score | -1.58 |
| Structure conservation index | 0.48 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.24 |
| SVM RNA-class probability | 0.914994 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 19193665 153 + 22422827 ---------------------------------CUACUCUCUGUGGGUGGGAUGCCCACAAGUGGGUGGCUUUA-----UAUGUGUGCCUUCGUUUAUCUCUGAUGAAAAGAGGAUUUAGUAGGGCGAAGGUUCAGUUGUGCGAAAGAUGGAUUACCACCCACUAUGCGCGCAAUGGAUCACUGACCCACA ---------------------------------........(((((((.....))))))).((((((.((((((-----(.......((((..((((((...))))))..)))).....)))))))...((((((.(((((((..((.(((........)))))...)))))))))))))....)))))). ( -55.90, z-score = -2.51, R) >droSim1.chrX 14833536 134 + 17042790 ---------------------------------CCACUCUCCGUGGGUGAGAUGCCCACAAGUGGGUG-------------------CCUUCGUUUAUUUGUGAUGAAAAGAGGAUUUAGUAGGG-----GUUCAGUUGUGCGAAAGAUGAAUUACCACCCACUAUGCGCGCAAUAGAACACUGACCCACC ---------------------------------.........((((((.....))))))..((((((.-------------------((((..((((((...))))))..))))......(((..-----((((.((((((((..((.((..........))))...)))))))).)))).))))))))). ( -44.30, z-score = -2.43, R) >droYak2.chrX 9638459 185 - 21770863 CCACUCGCAGUGGGUGGAAUGUCCAUAAGUGGGUGACUUUAUGUGGCUGGGAUGUCCGUAAGUGGGUGACUUUA-----UGUGUGUGUCUUCUUUUAUCUCUCGUGAAAAGAGGAUUUAGUAGGACGAAGCUUUGGUUGUGUGCGAGAUGGAUUUCCACGCAGCAUCCCUGCAAUGGAACACUGACCCAC- .........((((((.(....(((((.((.(((((......((((....(((.((((((..(((.(..(((...-----.((...((((((((...(((.(((.......))))))..)).))))))..))...)))..).)))...)))))).))).)))).)))))))...)))))....).))))))- ( -61.00, z-score = -1.07, R) >droEre2.scaffold_4690 9451243 124 + 18748788 -------------------------------------------------------CCAUAAGUGGGUGACUUGACUUCCUAUGUGUGCCUUCUUUAA-CUCCCAUGAAAAGAGGAUUUAUUAGGGCGAAGGUUCGGUUGUGCGUGAGUUGUAUUACCACCCAUCAUCCCAGCAAUGGAAC----------- -------------------------------------------------------......((((((.....((...(((.....((((((...(((-.(((..(....)..))).)))..)))))).))).))(((.(((((.....))))).)))))))))....(((....)))...----------- ( -32.60, z-score = -0.29, R) >consensus _________________________________C_ACUCUCUGUGGGUGGGAUGCCCACAAGUGGGUGACUUUA_____UAUGUGUGCCUUCGUUUAUCUCUCAUGAAAAGAGGAUUUAGUAGGGCGAAGGUUCAGUUGUGCGAAAGAUGGAUUACCACCCACCAUCCCCGCAAUGGAACACUGACCCAC_ ..........................................((((((.((..(((((....)))))..................((((((......(((((.......))))).......))))))...((((.((((((((.....((..........)).....)))))))).)))).)).)))))). (-23.08 = -25.14 + 2.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:59:54 2011