| Sequence ID | dm3.chrX |
|---|---|
| Location | 19,189,293 – 19,189,393 |
| Length | 100 |
| Max. P | 0.997554 |
| Location | 19,189,293 – 19,189,393 |
|---|---|
| Length | 100 |
| Sequences | 6 |
| Columns | 107 |
| Reading direction | forward |
| Mean pairwise identity | 70.07 |
| Shannon entropy | 0.54038 |
| G+C content | 0.43735 |
| Mean single sequence MFE | -27.35 |
| Consensus MFE | -8.71 |
| Energy contribution | -9.30 |
| Covariance contribution | 0.59 |
| Combinations/Pair | 1.29 |
| Mean z-score | -3.77 |
| Structure conservation index | 0.32 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 3.13 |
| SVM RNA-class probability | 0.997554 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 19189293 100 + 22422827 UAACCAUAUACCCCCCCACCCCCUCUC-AUCAGUGCCGUU--GAUUAUUUUCAGAGUCGGCGGC---ACCCAGAUG-AUAUAAGCACCUAUAAUGCUCAUAUCAUUG ...........................-....((((((((--((((........))))))))))---))...((((-((((.((((.......)))).)))))))). ( -29.20, z-score = -6.04, R) >droEre2.scaffold_4690 9446890 87 + 18748788 ------------UAACCAUAUCCCCC--AUCGGUGCGGUG--GAUUAUUUUCAGAGUCGGCGGC---ACCCAGAUG-AUAUAAGCACCUAUAAUGCUCAUAUCAUUG ------------..............--...(((((.((.--((((........)))).)).))---)))..((((-((((.((((.......)))).)))))))). ( -27.40, z-score = -2.93, R) >droYak2.chrX 9633966 88 - 21770863 ------------UAACCAUAUCCCCCC-AUCUGUGUCGUU--GAUUAUUUUCAGAGUCGGCGGC---ACCCAGAUG-AUAUAAGCACCUAUAAUGCUCAUAUCAUUG ------------...............-....((((((((--((((........))))))))))---))...((((-((((.((((.......)))).)))))))). ( -26.30, z-score = -4.46, R) >droSec1.super_8 1483207 94 + 3762037 ------------UAACCAUAUCCCCCCCAUCUGUGCCGUGUUGAUUAUUUUCAUAGUCGGCGGCGGCACCCAGAUG-AUAUAAGCAUCUAUAAUGCUCAUAUCAUUG ------------....................((((((((((((((((....))))))))).)))))))...((((-((((.(((((.....))))).)))))))). ( -32.50, z-score = -5.07, R) >droSim1.chrX 14829208 90 + 17042790 ------------UAACCAUAUCCCCCC-AUCUGUGCCGUGUUGAUUAUUUUCAGAGUCGGCGGC---ACCCAGAUG-AUAUAAGCAUCUAUAAUGCUCAUAUCAUUG ------------...............-....(((((((..(((((........))))))))))---))...((((-((((.(((((.....))))).)))))))). ( -26.20, z-score = -3.82, R) >droPer1.super_90 91563 102 - 211371 ----UAUGUAGAUU-CAAUGCACCUGUUGUUGACGACGUUGCUGAAAUCAUUGUUGGCGACGGACAAAUCGAGAUUCGAAGAAGAAAUAAUGAUCUUCAGUUUAUUG ----..........-(((((.(((((((((..((((.(((.....)))..))))..))))))).....(((.....))).(((((........))))).)).))))) ( -22.50, z-score = -0.27, R) >consensus ____________UAACCAUAUCCCCCC_AUCUGUGCCGUG__GAUUAUUUUCAGAGUCGGCGGC___ACCCAGAUG_AUAUAAGCACCUAUAAUGCUCAUAUCAUUG ..................................(((((...((((........)))).)))))........((((.((((.((((.......)))).)))))))). ( -8.71 = -9.30 + 0.59)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:59:53 2011