| Sequence ID | dm3.chrX |
|---|---|
| Location | 19,155,852 – 19,155,937 |
| Length | 85 |
| Max. P | 0.904896 |
| Location | 19,155,852 – 19,155,937 |
|---|---|
| Length | 85 |
| Sequences | 6 |
| Columns | 88 |
| Reading direction | forward |
| Mean pairwise identity | 70.70 |
| Shannon entropy | 0.56141 |
| G+C content | 0.36099 |
| Mean single sequence MFE | -16.33 |
| Consensus MFE | -7.01 |
| Energy contribution | -6.85 |
| Covariance contribution | -0.16 |
| Combinations/Pair | 1.64 |
| Mean z-score | -1.87 |
| Structure conservation index | 0.43 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.18 |
| SVM RNA-class probability | 0.904896 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 19155852 85 + 22422827 CAGACU-GUUAUCGAAGUCGAGUAUGCUCUUCCUCUUCGAUAAACGCAAUAUUUUGCAAUAAAGUAAA-UUAGUUUUAA-AACCACAG .(((((-((((((((((..(((....))).....)))))))))..((((....))))...........-.))))))...-........ ( -18.80, z-score = -3.28, R) >droSec1.super_8 1449705 85 + 3762037 CAGACU-GUUAUCGAAGUCGAGUAUGCUCUUCCUCUUCGAUAAACGCAAUAUUUUGCAAUAAAGUAAA-UUAGUUUUAA-AACCACAG .(((((-((((((((((..(((....))).....)))))))))..((((....))))...........-.))))))...-........ ( -18.80, z-score = -3.28, R) >droYak2.chrX 9600912 85 - 21770863 CAGACU-GAUAUCGAUGUCGAGUCUGCUCUUCCUCUUCGAUAAACGCAAUAUUUUGCAAUAAAGUAAA-UUAGUUUUAA-AACCACAG .(((((-((((((((.(..(((....)))..)....))))))...((((....))))...........-)))))))...-........ ( -15.70, z-score = -1.83, R) >droEre2.scaffold_4690 9414810 85 + 18748788 CAGACU-GAUAUCGAAGUCGAGUCUGCUCUUCCUCUUCGAUAAACUCAAUAUUUUGCAAUAAAAUAAA-UUAGUUUUAA-AACCACAG .(((((-((((((((((..(((....))).....)))))))).......(((((((...)))))))..-)))))))...-........ ( -16.00, z-score = -2.74, R) >droAna3.scaffold_12903 514767 87 + 802071 CGGAUUCGUCAACGAUAUCUGGCAACUCGUGCCACAGCGACCA-CAAAAAAAAAAAUAUUAAAACAAAGUUAACGCCAGCAGGCGCAG ((((((((....))).)))))((...((((......))))...-..............................(((....))))).. ( -16.40, z-score = -0.93, R) >apiMel3.Group1 10373561 85 + 25854376 CCGUGG-GUUAUCCAAUUCGAUACGGGUCCACGUCGUGGGUAAGUUGAAAUUUUUGAAAUAAGAAAAA-UUAUUUUUAA-AGCUAAAG ....((-.(((((((...((((..(....)..))))))))))).))....((((.(((((((......-))))))).))-))...... ( -12.30, z-score = 0.81, R) >consensus CAGACU_GUUAUCGAAGUCGAGUAUGCUCUUCCUCUUCGAUAAACGCAAUAUUUUGCAAUAAAAUAAA_UUAGUUUUAA_AACCACAG .........((((((((..(((....))).....)))))))).............................................. ( -7.01 = -6.85 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:59:40 2011