Locus 15453

Sequence ID dm3.chrX
Location 19,125,862 – 19,125,979
Length 117
Max. P 0.647224
window21297

overview

Window 7

Location 19,125,862 – 19,125,979
Length 117
Sequences 3
Columns 118
Reading direction reverse
Mean pairwise identity 86.36
Shannon entropy 0.18677
G+C content 0.27484
Mean single sequence MFE -20.45
Consensus MFE -16.23
Energy contribution -16.57
Covariance contribution 0.34
Combinations/Pair 1.11
Mean z-score -1.77
Structure conservation index 0.79
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.33
SVM RNA-class probability 0.647224
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chrX 19125862 117 - 22422827
UGAUAGAUUUAUAAAACACAGUAAUUAUGUUGAAACACAUUACUUGGUUACUUGAUUUUCCCAGUUGAAAGUGUUUUCUCUCUGUAAGACAUUCUGU-AACUUUUCAAUCAUAUUCCU
((((.((.........((.((((((..(((....))).))))))))(((((..((((((..(((..((((....))))...)))..))).)))..))-)))...)).))))....... ( -15.90, z-score =   0.78, R)
>droSim1.chrX 14791396 105 - 17042790
-----------UAAAACACAGUAAUUAUGUUGAAACACA--ACUUUAUUACUUGAUUUUCCAAGUUGAAAGUGUUUUCUCUCUGGAAAAUAUUCUUCAAACUUUUCAACCAUAUUACU
-----------........((((((...(((((((....--.........((((......))))(((((((((((((((....)))))))))).)))))...)))))))...)))))) ( -22.60, z-score =  -3.79, R)
>droSec1.super_8 1419372 116 - 3762037
UGAUAGAUUUAUAAAACACAGUAAUUAUGUUGAAACACA--ACUUGAUUACUUGAUUUUCCAAGUUGAAAGUGUUUUCUCUCUGGAAAAUAUUCUUCAAACUUUUCAACCAUAUUACU
...................((((((...(((((((..((--(((((..............)))))))..((((((((((....)))))))))).........)))))))...)))))) ( -22.84, z-score =  -2.30, R)
>consensus
UGAUAGAUUUAUAAAACACAGUAAUUAUGUUGAAACACA__ACUUGAUUACUUGAUUUUCCAAGUUGAAAGUGUUUUCUCUCUGGAAAAUAUUCUUCAAACUUUUCAACCAUAUUACU
...................((((((...(((((((......((((....(((((......)))))...))))((((((......))))))............)))))))...)))))) (-16.23 = -16.57 +   0.34)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:59:38 2011