Locus 15452

Sequence ID dm3.chrX
Location 19,121,979 – 19,122,106
Length 127
Max. P 0.927809
window21295 window21296

overview

Window 5

Location 19,121,979 – 19,122,093
Length 114
Sequences 5
Columns 114
Reading direction reverse
Mean pairwise identity 92.65
Shannon entropy 0.12687
G+C content 0.52000
Mean single sequence MFE -39.86
Consensus MFE -33.60
Energy contribution -33.16
Covariance contribution -0.44
Combinations/Pair 1.15
Mean z-score -1.85
Structure conservation index 0.84
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.53
SVM RNA-class probability 0.730202
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chrX 19121979 114 - 22422827
AGGCAAUUGAGAAACGUUUUCCGUAUUUACGUUGGCCCACUCAUCAUAUGGGUAUGGGUGGGUAUUCGUGGCGGAAACGUCUGUUGUGGUUGGUGUCGCUUGUACCAGCGACAG
..(((((..(((..(((((.((((...((((...(((((((((((......).))))))))))...)))))))))))))))))))))......(((((((......))))))). ( -43.20, z-score =  -3.03, R)
>droSim1.chrX 14787245 110 - 17042790
AGGCAAUUGAGAAACGUUUUCCGUAUUUACGUUGGCCCACUCAUCAUAUGGGCA----UGGGUCUUCGUGGCGGAAACGUCUGUUGUGGUUGGUGUCGCUUGGACCGGCGACAG
..(((((..(((..(((((.((((...((((..(((((((((((...)))))..----))))))..)))))))))))))))))))))......(((((((......))))))). ( -38.70, z-score =  -1.45, R)
>droSec1.super_8 1415725 110 - 3762037
AGGCAAUUGAGAAACGUUUUCCGUAUUUACGUUGGCCCACUCAUCAUAUGGGCA----UGGGUCUUCGUGGCGGAAACGUCUGUUGUGGUUGGUGUCGCUUGGACCGGCGACAG
..(((((..(((..(((((.((((...((((..(((((((((((...)))))..----))))))..)))))))))))))))))))))......(((((((......))))))). ( -38.70, z-score =  -1.45, R)
>droYak2.chrX 9567336 110 + 21770863
AGGCAAUCGAGAAACGUUUUCCGUAUUUACGUUGGCCCACUCAUCAUUUGGGUA----UGGGUCGCCGUGGCGGAAACGUCUGUUGUGGUUGCUGUUGUUUGGACCGGCGACAG
.((((((((.((.((((((.((((...((((.(((((((((((.....))))).----.)))))).))))))))))))))...)).))))))))((((((......)))))).. ( -42.00, z-score =  -2.32, R)
>droEre2.scaffold_4690 9382843 110 - 18748788
AGGCAAUUGAGAAACGUUUUCCGUAUUUACGUUGGCCCACUCAUCAUAUGGGUA----UGGGUCGUAGUGGCGGAAACGUCUGUUGUGGUUGGCGCUGCUUGGACCGGCAACAG
.............((((((.((((..(((((...((((((((((...)))))).----.)))))))))..))))))))))((((((((((((((...)))..)))).))))))) ( -36.70, z-score =  -1.02, R)
>consensus
AGGCAAUUGAGAAACGUUUUCCGUAUUUACGUUGGCCCACUCAUCAUAUGGGUA____UGGGUCUUCGUGGCGGAAACGUCUGUUGUGGUUGGUGUCGCUUGGACCGGCGACAG
.(.((((((.((.((((((.((((...((((..((((((((((.....))))......))))))..))))))))))))))...)).)))))).)((((((......)))))).. (-33.60 = -33.16 +  -0.44)

alignment

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secondary structure

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dotplot

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Window 6

Location 19,122,015 – 19,122,106
Length 91
Sequences 4
Columns 91
Reading direction reverse
Mean pairwise identity 95.13
Shannon entropy 0.07547
G+C content 0.46596
Mean single sequence MFE -28.78
Consensus MFE -23.52
Energy contribution -24.02
Covariance contribution 0.50
Combinations/Pair 1.00
Mean z-score -2.64
Structure conservation index 0.82
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 1.33
SVM RNA-class probability 0.927809
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chrX 19122015 91 - 22422827
UCUUUGCUUUUCCAGGCAAUUGAGAAACGUUUUCCGUAUUUACGUUGGCCCACUCAUCAUAUGGGUAUGGGUGGGUAUUCGUGGCGGAAAC
((((((((......))))...)))).....(((((((...((((...(((((((((((......).))))))))))...))))))))))). ( -32.60, z-score =  -3.48, R)
>droSim1.chrX 14787281 87 - 17042790
UCUUUGCUUUUCCAGGCAAUUGAGAAACGUUUUCCGUAUUUACGUUGGCCCACUCAUCAUAUGGGCAUGGGUCU----UCGUGGCGGAAAC
((((((((......))))...)))).....(((((((...((((..(((((((((((...)))))..)))))).----.))))))))))). ( -28.10, z-score =  -2.56, R)
>droSec1.super_8 1415761 87 - 3762037
UCUUUGCUUUUCCAGGCAAUUGAGAAACGUUUUCCGUAUUUACGUUGGCCCACUCAUCAUAUGGGCAUGGGUCU----UCGUGGCGGAAAC
((((((((......))))...)))).....(((((((...((((..(((((((((((...)))))..)))))).----.))))))))))). ( -28.10, z-score =  -2.56, R)
>droEre2.scaffold_4690 9382879 87 - 18748788
UCUUUGCUUUUCCAGGCAAUUGAGAAACGUUUUCCGUAUUUACGUUGGCCCACUCAUCAUAUGGGUAUGGGUCG----UAGUGGCGGAAAC
((((((((......))))...)))).....(((((((..(((((...((((((((((...))))))..))))))----)))..))))))). ( -26.30, z-score =  -1.98, R)
>consensus
UCUUUGCUUUUCCAGGCAAUUGAGAAACGUUUUCCGUAUUUACGUUGGCCCACUCAUCAUAUGGGCAUGGGUCG____UCGUGGCGGAAAC
((((((((......))))...)))).....(((((((...((((..(((((((((((...)))))..))))))......))))))))))). (-23.52 = -24.02 +   0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:59:37 2011