| Sequence ID | dm3.chrX |
|---|---|
| Location | 19,111,960 – 19,112,077 |
| Length | 117 |
| Max. P | 0.500000 |
| Location | 19,111,960 – 19,112,077 |
|---|---|
| Length | 117 |
| Sequences | 4 |
| Columns | 135 |
| Reading direction | reverse |
| Mean pairwise identity | 76.35 |
| Shannon entropy | 0.36638 |
| G+C content | 0.51680 |
| Mean single sequence MFE | -33.97 |
| Consensus MFE | -22.19 |
| Energy contribution | -21.82 |
| Covariance contribution | -0.38 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.36 |
| Structure conservation index | 0.65 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.00 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>dm3.chrX 19111960 117 - 22422827 ---------------CCGACCAUCCA--UCGCAUAGUCGCCA-AGACACGGAACCGCCAGAUAACUCGGGUAUUUUCAUUCAUUAUCGCCGUGAAUAAAUGAAUACACGUGAUUGAAUGCCAGUUUCACGGCGGG ---------------(((.((.....--.......(((....-.)))..(((((.(((.((....)).))).....((((((..(((((.(((.((......)).))))))))))))))...)))))..))))). ( -28.40, z-score = -0.23, R) >droSim1.chrX 14777129 100 - 17042790 ----------------------------------AGUCGCCG-AGGCACGGAACAGCCAGAUAACUCGGGUAUUUUCAUUCAUUAUCGCCGUGAAUAAGUGAAUACACGUGAUUGAAUGCCAGUUUUACGGCGGG ----------------------------------..((((((-.(((........)))....((((.((.......((((((..(((((.(((.((......)).))))))))))))))))))))...)))))). ( -27.21, z-score = -0.88, R) >droYak2.chrX 9556968 132 + 21770863 ACGGCGAUCCACCGUCCAGUCA-CCAAGUCGCCAAGUCGCCAGAGACACGGAACCACCAGAUAACUCGGGUAUUUUCAUUCAUUAUCGCCGUGA--AGAGCACGGCACGUGAUUGAAUGCCAGUUUCACGGCGGG ..((((((..............-....))))))...(((((.(((((..((.....))..........(((((..(((.((((....((((((.--....))))))..)))).)))))))).)))))..))))). ( -41.87, z-score = -1.62, R) >droEre2.scaffold_4690 9373045 117 - 18748788 ---------------CCGGCGAUCCAGCUCUCCCAGUCGCCA-AGACACGGAACCACCAGAUAACUCGGCUAUUUUCAUUCAUUAUCGCCGUGA--AAACCACGGCACGUGAUUGAAUGCCAGUUUCACGGCGGG ---------------(((.((.........(((..(((....-.)))..))).......((.((((.(((....((((.((((....((((((.--....))))))..)))).)))).))))))))).)).))). ( -38.40, z-score = -2.71, R) >consensus _______________CCGGCCA_CCA__UCGCC_AGUCGCCA_AGACACGGAACCACCAGAUAACUCGGGUAUUUUCAUUCAUUAUCGCCGUGA__AAAUCAAGACACGUGAUUGAAUGCCAGUUUCACGGCGGG ...................................(((......)))..((((..(((.((....)).)))..))))........(((((((((................(((((.....)))))))))))))). (-22.19 = -21.82 + -0.38)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:59:34 2011