Locus 15447

Sequence ID dm3.chrX
Location 19,101,727 – 19,101,879
Length 152
Max. P 0.798576
window21287 window21288

overview

Window 7

Location 19,101,727 – 19,101,840
Length 113
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 83.64
Shannon entropy 0.28121
G+C content 0.50330
Mean single sequence MFE -32.86
Consensus MFE -23.86
Energy contribution -23.78
Covariance contribution -0.08
Combinations/Pair 1.18
Mean z-score -1.84
Structure conservation index 0.73
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.72
SVM RNA-class probability 0.798576
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chrX 19101727 113 - 22422827
---AAUUUCAAU----UUGCAGCUAAAAGUAGCGAAAGCGGUAGCGAACACACGCAUGUCGCUGCCUCCCGAGGACACCGAUUUGUCCACAAAUUCCGCAUACGAAUCCGCACUCCAAAU
---.........----.(((.((((....))))....((((((((((.((......))))))))))......(((((......))))).........))..........)))........ ( -29.70, z-score =  -2.21, R)
>droSim1.chrX 14766568 117 - 17042790
---AAUUUCAAUUUGAUUGCAGCUAAACGUUGUGAUAGCGGUAGCGAACAUACGCAUGUCGCUACCUCCCGAGGACACCGAUUUGUCCACUAAUUCCGCACACGAAUACGCACUCCAAAU
---.......(((((((..((((.....))))..)).((((((((((.(((....)))))))))))......(((((......))))).........))...)))))............. ( -33.10, z-score =  -3.31, R)
>droSec1.super_8 1396632 117 - 3762037
---AAUUUCAAUUUGAUUGCAGCUAAACGUUGUGAGAGCUGUAGCGAACAUACGCAUGUCGCUACCUCCCGAGGACACCGAUUUGUCCACUAAUUCCGCACACGAAUACGCACUCCAAAU
---.......(((((...(((((.....)))))(((.((.(((((((.(((....)))))))))).......(((((......))))).....................)).)))))))) ( -28.30, z-score =  -1.95, R)
>droYak2.chrX 17691165 118 - 21770863
UCGCAUCUGAAUUUGAUUGCAGCUAAGAGCAGCGGAAGCGGUAGCGAACA--CGCAUGUCGCUGCCUCCCGAGGACGCCGAUUUGUCCACCAGAUCCGCACACGAAUCCGCAUUCCGCGU
..(((((.......)).))).((.....)).((((((((((((((((.((--....))))))))))..........((.((((((.....)))))).))..........)).)))))).. ( -39.60, z-score =  -1.11, R)
>droEre2.scaffold_4690 9362927 115 - 18748788
---AAAUUCAAUCUGAUUGCAUCUUACAGCAGCGGAAGCGGUAGCGAAGA--CGCAUGUCGCUGUCUCCCGAGGACGCCGAUUUGUCCACCAGAUCUGCACACGAAUCCGCAUUCCGAGU
---..((((........(((........)))(((((((((..((((....--))).)..))))((((.....))))((.((((((.....)))))).)).......))))).....)))) ( -33.60, z-score =  -0.62, R)
>consensus
___AAUUUCAAUUUGAUUGCAGCUAAAAGUAGCGAAAGCGGUAGCGAACA_ACGCAUGUCGCUGCCUCCCGAGGACACCGAUUUGUCCACCAAUUCCGCACACGAAUCCGCACUCCAAAU
..............((.(((...........((....))((((((((.((......))))))))))......(((((......))))).....................))).))..... (-23.86 = -23.78 +  -0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 8

Location 19,101,767 – 19,101,879
Length 112
Sequences 5
Columns 116
Reading direction reverse
Mean pairwise identity 69.61
Shannon entropy 0.52718
G+C content 0.48766
Mean single sequence MFE -31.56
Consensus MFE -14.40
Energy contribution -13.96
Covariance contribution -0.44
Combinations/Pair 1.38
Mean z-score -1.32
Structure conservation index 0.46
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.02
SVM RNA-class probability 0.507076
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chrX 19101767 112 - 22422827
CUUGAAAGCGAAUGCGUGUGGAAAAAUAAUUUCUGAUUAAAUUUCAAUUUG----CAGCUAAAAGUAGCGAAAGCGGUAGCGAACACACGCAUGUCGCUGCCUCCCGAGGACACCG
......((((((((((((((((((..(((((...)))))..))))......----..((((......((....))..))))...))))))))).))))).(((....)))...... ( -35.40, z-score =  -2.91, R)
>droSim1.chrX 14766608 116 - 17042790
CUUGGAAGCAAACGCGUGUGGAAAAGCAGUUUCUGAUUAAAUUUCAAUUUGAUUGCAGCUAAACGUUGUGAUAGCGGUAGCGAACAUACGCAUGUCGCUACCUCCCGAGGACACCG
(((((..((..((((((.(((....((((((..(((.......)))....))))))..))).))).)))....))((((((((.(((....)))))))))))..)))))....... ( -35.00, z-score =  -1.96, R)
>droSec1.super_8 1396672 116 - 3762037
CUUGGAAGCAAACGCGUGUGGAAAAGCAGUUUCUGAUUAAAUUUCAAUUUGAUUGCAGCUAAACGUUGUGAGAGCUGUAGCGAACAUACGCAUGUCGCUACCUCCCGAGGACACCG
(((((.(((..((((((.(((....((((((..(((.......)))....))))))..))).))).)))....)))(((((((.(((....))))))))))...)))))....... ( -31.70, z-score =  -0.99, R)
>droYak2.chrX 17691205 98 - 21770863
----------------CUUGAACGCGAUUAAAUUAUUCGCAUCUGAAUUUGAUUGCAGCUAAGAGCAGCGGAAGCGGUAGCGAAC--ACGCAUGUCGCUGCCUCCCGAGGACGCCG
----------------((((...(((((((((((...........))))))))))).((.....)).((....))((((((((.(--(....))))))))))...))))....... ( -31.30, z-score =  -1.01, R)
>droEre2.scaffold_4690 9362967 94 - 18748788
----------------UCCGAAAGCGAAUGCAAUA----AAAUUCAAUCUGAUUGCAUCUUACAGCAGCGGAAGCGGUAGCGAAG--ACGCAUGUCGCUGUCUCCCGAGGACGCCG
----------------((((...((..(((((((.----............)))))))......))..))))((((..((((...--.))).)..))))((((.....)))).... ( -24.42, z-score =   0.29, R)
>consensus
CUUG_AAGC_AA_GCGUGUGGAAAAGAAGUUUCUGAUUAAAUUUCAAUUUGAUUGCAGCUAAAAGUAGCGAAAGCGGUAGCGAACA_ACGCAUGUCGCUGCCUCCCGAGGACACCG
.................(((...............................................((....))((((((((...........)))))))).........))).. (-14.40 = -13.96 +  -0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:59:30 2011