| Sequence ID | dm3.chrX |
|---|---|
| Location | 19,091,138 – 19,091,206 |
| Length | 68 |
| Max. P | 0.918682 |
| Location | 19,091,138 – 19,091,206 |
|---|---|
| Length | 68 |
| Sequences | 4 |
| Columns | 68 |
| Reading direction | forward |
| Mean pairwise identity | 85.05 |
| Shannon entropy | 0.24236 |
| G+C content | 0.57054 |
| Mean single sequence MFE | -14.35 |
| Consensus MFE | -9.81 |
| Energy contribution | -10.24 |
| Covariance contribution | 0.44 |
| Combinations/Pair | 1.15 |
| Mean z-score | -2.50 |
| Structure conservation index | 0.68 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.27 |
| SVM RNA-class probability | 0.918682 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 19091138 68 + 22422827 GACCUUCUGACCCCGUGAGCACCAGAAGCCGCACCUCCACGUCCAUUCGGAUUAUUCAAUCCGAUCCA ...((((((....(....)...))))))..................(((((((....))))))).... ( -14.70, z-score = -2.20, R) >droEre2.scaffold_4690 9352273 64 + 18748788 GACCUUCUGACAUCGCGAGCACCAGAAGCUGAACCUCCACAGCCAGUCAGAUCAUACAAUCCCG---- .....((((((..(....)........((((........))))..)))))).............---- ( -12.50, z-score = -2.10, R) >droSec1.super_8 1385477 68 + 3762037 GACCUUCUGACCCCGUGAGCACCAGAAGCCGCACCUCCACACCCAUUCGGAUUACUCGAUCCGAUCCA ...((((((....(....)...))))))..................(((((((....))))))).... ( -15.10, z-score = -2.85, R) >droSim1.chrX 14753699 68 + 17042790 GACCUUCUGACCCCGUGAGCACCAGAAGCCGCACCUCCACACCCAUUCGGAUUACUCGAUCCGAUCCA ...((((((....(....)...))))))..................(((((((....))))))).... ( -15.10, z-score = -2.85, R) >consensus GACCUUCUGACCCCGUGAGCACCAGAAGCCGCACCUCCACACCCAUUCGGAUUACUCAAUCCGAUCCA ...((((((.............))))))..................(((((((....))))))).... ( -9.81 = -10.24 + 0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:59:28 2011