Locus 15443

Sequence ID	dm3.chrX
Location	19,078,254 – 19,078,341
Length	87
Max. P	0.772547

overview

Window 0

Location	19,078,254 – 19,078,341
Length	87
Sequences	4
Columns	91
Reading direction	forward
Mean pairwise identity	69.36
Shannon entropy	0.48567
G+C content	0.27254
Mean single sequence MFE	-14.63
Consensus MFE	-6.91
Energy contribution	-6.85
Covariance contribution	-0.06
Combinations/Pair	1.47
Mean z-score	-1.78
Structure conservation index	0.47
Background model	dinucleotide
Decision model	sequence based alignment quality
SVM decision value	0.64
SVM RNA-class probability	0.772547
Prediction	RNA

Download alignment: ClustalW | MAF

>dm3.chrX 19078254 87 + 22422827
----UGGAAAGGCUGAAUGAAACAAUUGUGAGAAUCUUACUAUUGAUUACUUUUAAUUCAUUCAUUCAAUUAACAUUCUAUUGCCAAAACA
----......(((((((((((..(((((.(((((((........)))).))).)))))..))))))))..............)))...... ( -16.33, z-score =  -2.13, R)
>droSec1.super_8 1367759 85 + 3762037
-----UGAAAGGCUGAAUGAAGCGAUUAUGAGAAUCUUACUAUUGAUUACUUU-AAUUCAUUCAUUCAAUUAACAUUCUAAUGCCAAAACA
-----.....(((((((((((..(((((.(((((((........)))).))))-))))..))))))))((((......)))))))...... ( -18.10, z-score =  -3.10, R)
>droSim1.chrX 14739926 85 + 17042790
-----UGAAAGACUGAAUGAAGCGAUUAUGAGAAUCUUACUAUUGAUUACAUU-AAUUCAUUCAUUCAAUUAACAUUCUAAUGCCAAAACA
-----........((((((((..(((((....((((........))))....)-))))..))))))))....................... ( -13.30, z-score =  -1.67, R)
>droVir3.scaffold_12970 4247134 88 - 11907090
CCCAUAAACAAGGUAGUUAUUAUUAAUAU-AAAAUAUGAUUGUUUGCUCCGUUUAUUGUUUUCACUU--UCAACGUUUUAUUAUUGAAGCA
...((((((..(((((..(((((......-.....)))))...)))))..))))))...........--.....((((((....)))))). ( -10.80, z-score =  -0.24, R)
>consensus
_____UGAAAGGCUGAAUGAAACGAUUAUGAGAAUCUUACUAUUGAUUACUUU_AAUUCAUUCAUUCAAUUAACAUUCUAAUGCCAAAACA
.............((((((((..(((((....((((........)))).....)))))..))))))))....................... ( -6.91 =  -6.85 +  -0.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:59:24 2011