Locus 15442

Sequence ID	dm3.chrX
Location	19,057,752 – 19,057,849
Length	97
Max. P	0.940341

overview

Window 9

Location	19,057,752 – 19,057,849
Length	97
Sequences	3
Columns	120
Reading direction	forward
Mean pairwise identity	59.59
Shannon entropy	0.54741
G+C content	0.43207
Mean single sequence MFE	-30.47
Consensus MFE	-14.70
Energy contribution	-15.33
Covariance contribution	0.63
Combinations/Pair	1.33
Mean z-score	-1.83
Structure conservation index	0.48
Background model	dinucleotide
Decision model	sequence based alignment quality
SVM decision value	1.44
SVM RNA-class probability	0.940341
Prediction	RNA

Download alignment: ClustalW | MAF

>dm3.chrX 19057752 97 + 22422827
-----------------UUUAAAUUCAUGGGCCAGGGAAAUCCUAUGGAUCGCCGAUAAAUAAAGCUGAUACACGGAUUAUCAG------UCGAAGAUCAGUAGUUGCAGCUUUUUCGGG
-----------------.....(((((((((..........)))))))))..((((.....(((((((..((((.((((.((..------..)).)))).)).))..))))))).)))). ( -26.50, z-score =  -1.95, R)
>droSec1.super_8 1347024 112 + 3762037
UUUAAAUCGGCGGCCCAGUGAAAUUCAUGGGCCAGGGAAAUCCUAUGGAUCACCGAUAAAUAAAGCUGAUAC--GGCUUAUCAG------UCGAAGAUCAGUAGUUGCAGCUUUUCGAGG
.....(((((.((((((.((.....)))))))).(((....)))........)))))....(((((((..((--.(((.(((..------.....))).))).))..)))))))...... ( -34.40, z-score =  -2.12, R)
>droAna3.scaffold_12903 126613 110 - 802071
--------AAAUGAUAGUUUUCUUUGGUGGGCUUGGUAAUCCCCAUGAAUCAGCGAUAAAUCACACUGAUAG--AGCCUAUUGGGGAAACUCAAAAGGCAAUAGAGACAGGUGUGUUGUG
--------.....(((.((.(((((((((((..(....)..)))))..(((((.(........).)))))..--.((((.(((((....))))).))))..)))))).)).)))...... ( -30.50, z-score =  -1.41, R)
>consensus
____________G____UUUAAAUUCAUGGGCCAGGGAAAUCCUAUGGAUCACCGAUAAAUAAAGCUGAUAC__GGCUUAUCAG______UCGAAGAUCAGUAGUUGCAGCUUUUUCGGG
.......................((((((((..........))))))))...((((.....(((((((.......((((.((.((....)).)).))))........))))))).)))). (-14.70 = -15.33 +   0.63)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:59:23 2011