| Sequence ID | dm3.chr2L |
|---|---|
| Location | 11,963,951 – 11,964,061 |
| Length | 110 |
| Max. P | 0.784473 |
| Location | 11,963,951 – 11,964,061 |
|---|---|
| Length | 110 |
| Sequences | 4 |
| Columns | 118 |
| Reading direction | forward |
| Mean pairwise identity | 69.34 |
| Shannon entropy | 0.47169 |
| G+C content | 0.45366 |
| Mean single sequence MFE | -27.55 |
| Consensus MFE | -12.60 |
| Energy contribution | -14.10 |
| Covariance contribution | 1.50 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.83 |
| Structure conservation index | 0.46 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.51 |
| SVM RNA-class probability | 0.723732 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 11963951 110 + 23011544 GAACUUCAUUAGCGACUGCGAAUCAACAAA--GCUGAUGAGCAGCUUAGGGCCAACAGA--GCGACUUGUGGCGAGGAA-ACAGAAAUGGUAUAUGGCACAAUACCAUACCAUAU--- ...((((......(.((((..((((.....--..))))..))))).....((((.(((.--.....)))))))))))..-......((((((..(((.......)))))))))..--- ( -27.00, z-score = -1.57, R) >droEre2.scaffold_4929 13195126 83 - 26641161 GAACUUCAUUAGCGACUGCGAAUCAACAAA--GCUGAUGAGCAGCUUAGGGCCCACAGA--GCGCCUAUAUGCUAUAUG-GCAACUAU------------------------------ .....(((((((((.((((..((((.....--..))))..))))..((((((.......--)).))))..))))).)))-).......------------------------------ ( -19.90, z-score = -0.39, R) >droYak2.chr2L 8385996 116 + 22324452 GAACUUCAUUAGCGGCUGCGAAUCAACAAAUAGCUGAUGAGCAGCUUAGGGCCCACAGAGAGCGCCUUGAGGUGAUGAA-AUACAAAUGGUAUAUGGUGUGCCAU-AUACUAUACUAA ....(((((((.(.(((((..((((.(.....).))))..)))))(((((((.(.......).)))))))).)))))))-......(((((((((((....))))-)))))))..... ( -41.00, z-score = -4.06, R) >droSec1.super_16 163344 91 + 1878335 GAACUUCAUUAGCGACUGCGAAUCAACAAA--GCUGAUGAGCAGCUUAGGGCCAACAGA--GCGCCUAGUGGUGAGGAACAUAUAUAUACCAUAU----------------------- ...((((((((..(.((((..((((.....--..))))..)))))((((((((....).--)).)))))))))))))..................----------------------- ( -22.30, z-score = -1.30, R) >consensus GAACUUCAUUAGCGACUGCGAAUCAACAAA__GCUGAUGAGCAGCUUAGGGCCAACAGA__GCGCCUAGAGGCGAGGAA_ACAAAAAUGGUAUAU_______________________ ...........((..((((..((((.(.....).))))..))))(((((((((........).))))))))))............................................. (-12.60 = -14.10 + 1.50)
| Location | 11,963,951 – 11,964,061 |
|---|---|
| Length | 110 |
| Sequences | 4 |
| Columns | 118 |
| Reading direction | reverse |
| Mean pairwise identity | 69.34 |
| Shannon entropy | 0.47169 |
| G+C content | 0.45366 |
| Mean single sequence MFE | -27.41 |
| Consensus MFE | -15.24 |
| Energy contribution | -15.55 |
| Covariance contribution | 0.31 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.49 |
| Structure conservation index | 0.56 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.68 |
| SVM RNA-class probability | 0.784473 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 11963951 110 - 23011544 ---AUAUGGUAUGGUAUUGUGCCAUAUACCAUUUCUGU-UUCCUCGCCACAAGUCGC--UCUGUUGGCCCUAAGCUGCUCAUCAGC--UUUGUUGAUUCGCAGUCGCUAAUGAAGUUC ---(((((((((......)))))))))...........-................((--(..((((((.....(((((..((((((--...))))))..))))).))))))..))).. ( -28.10, z-score = -1.48, R) >droEre2.scaffold_4929 13195126 83 + 26641161 ------------------------------AUAGUUGC-CAUAUAGCAUAUAGGCGC--UCUGUGGGCCCUAAGCUGCUCAUCAGC--UUUGUUGAUUCGCAGUCGCUAAUGAAGUUC ------------------------------........-(((.((((...((((.((--(.....))))))).(((((..((((((--...))))))..))))).)))))))...... ( -25.20, z-score = -1.12, R) >droYak2.chr2L 8385996 116 - 22324452 UUAGUAUAGUAU-AUGGCACACCAUAUACCAUUUGUAU-UUCAUCACCUCAAGGCGCUCUCUGUGGGCCCUAAGCUGCUCAUCAGCUAUUUGUUGAUUCGCAGCCGCUAAUGAAGUUC ........((((-((((....)))))))).......((-(((((.......(((.((((.....)))))))..(((((..((((((.....))))))..))))).....))))))).. ( -36.30, z-score = -3.38, R) >droSec1.super_16 163344 91 - 1878335 -----------------------AUAUGGUAUAUAUAUGUUCCUCACCACUAGGCGC--UCUGUUGGCCCUAAGCUGCUCAUCAGC--UUUGUUGAUUCGCAGUCGCUAAUGAAGUUC -----------------------...((((...............))))......((--(..((((((.....(((((..((((((--...))))))..))))).))))))..))).. ( -20.06, z-score = 0.02, R) >consensus _______________________AUAUACCAUAUAUAU_UUCAUCACCACAAGGCGC__UCUGUGGGCCCUAAGCUGCUCAUCAGC__UUUGUUGAUUCGCAGUCGCUAAUGAAGUUC ..............................................................((((((.....(((((..((((((.....))))))..))))).))))))....... (-15.24 = -15.55 + 0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:34:00 2011