| Sequence ID | dm3.chrX |
|---|---|
| Location | 19,006,955 – 19,007,055 |
| Length | 100 |
| Max. P | 0.708177 |
| Location | 19,006,955 – 19,007,055 |
|---|---|
| Length | 100 |
| Sequences | 5 |
| Columns | 105 |
| Reading direction | forward |
| Mean pairwise identity | 80.86 |
| Shannon entropy | 0.34038 |
| G+C content | 0.39157 |
| Mean single sequence MFE | -24.26 |
| Consensus MFE | -15.02 |
| Energy contribution | -15.66 |
| Covariance contribution | 0.64 |
| Combinations/Pair | 1.22 |
| Mean z-score | -1.83 |
| Structure conservation index | 0.62 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.47 |
| SVM RNA-class probability | 0.708177 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 19006955 100 + 22422827 CAUCCCGUCAAUUUCUCCUUUUGGGACUCUGCCGCUUCGGUUAUUGUUUGCAGUGGCCG-----GCGAGAGUUUUUUGAUUUAUAUUUAAUUCAAUUUUUAUUGU ..(((((..............)))))((((..(((..(((((((((....)))))))))-----)))))))....((((.(((....))).)))).......... ( -24.94, z-score = -2.24, R) >droSim1.chrX 14684470 99 + 17042790 CAUCCCGUCAAUUUCUCCUUUUGGGACUCUGCCGCUCCGGUUAUUGUUUGCAGUGGCCG-----GCGAGAGUUUUU-GAUUUAUAUUUAAUUCAAUUUUUAUUGU ..(((((..............)))))((((..(((..(((((((((....)))))))))-----)))))))...((-((.(((....))).)))).......... ( -24.94, z-score = -2.10, R) >droSec1.super_8 1297696 99 + 3762037 CAUCCCGUCAAUUUCUCCUUUUUGGACUCUGCCGCUCCGGUUAUUGUUUGCAGUGGCCG-----GCGAGAGUUUUU-GAUUUAUAUUUAAUUCAAUUUUUAUUGU ......(((((.(((((......((......))...((((((((((....)))))))))-----).)))))...))-)))......................... ( -23.10, z-score = -1.98, R) >droEre2.scaffold_4690 9279288 96 + 18748788 CCUGCUGUCAGU------UUUUGGGGCUCUGCUGCCUUGGUUAUUGUUUGCAGUGGCCGAGAG-GCGAGAGUUUU--GAUUUAUAUUUAAUUCAAUUUUUAUUGU .((((...((((------..(..((((......))))..)..))))...))))..(((....)-))..(((..((--((.(((....))).))))..)))..... ( -30.20, z-score = -2.93, R) >droPer1.super_14 140203 99 + 2168203 --UACCAUUUCUGAUUUCUUUUGG----UCGGUCUCCCGGUUUUUGUUUGCAGCGAGCGAGCGAGCGAGAGUUUUUUGAUUUAUAUUUAAUUCAAUUUUUAUUGU --........((((((......))----)))).(((.((...(((((((((.....))))))))))).)))....((((.(((....))).)))).......... ( -18.10, z-score = 0.10, R) >consensus CAUCCCGUCAAUUUCUCCUUUUGGGACUCUGCCGCUCCGGUUAUUGUUUGCAGUGGCCG_____GCGAGAGUUUUU_GAUUUAUAUUUAAUUCAAUUUUUAUUGU .......................(((((((((.....(((((((((....))))))))).....))).))))))...((.(((....))).))............ (-15.02 = -15.66 + 0.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:59:14 2011