| Sequence ID | dm3.chrX |
|---|---|
| Location | 19,005,188 – 19,005,341 |
| Length | 153 |
| Max. P | 0.590834 |
| Location | 19,005,188 – 19,005,341 |
|---|---|
| Length | 153 |
| Sequences | 5 |
| Columns | 169 |
| Reading direction | forward |
| Mean pairwise identity | 73.85 |
| Shannon entropy | 0.45616 |
| G+C content | 0.43764 |
| Mean single sequence MFE | -37.84 |
| Consensus MFE | -22.28 |
| Energy contribution | -24.08 |
| Covariance contribution | 1.80 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.22 |
| Structure conservation index | 0.59 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.20 |
| SVM RNA-class probability | 0.590834 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 19005188 153 + 22422827 ----------ACACAUUACGCACACAACUGCACGCGACUGGGAAGUAAAGUGUAUUGGAGGCGGAUGUAUCGAUUAUUCGAUUAUUUCUGACCUCCCCUUCAAAA------ACAAAAACACAAAGCCUGGCGAAAAAGUUGGAAAACUGAAAAGGAUGUUGCAUAUAAA ----------.........((((((((((.....((.(..((.......((((.(((((((((((...(((((....)))))....)))).))))).........------...)).))))....))..)))....))))).....((....))..)).)))....... ( -36.90, z-score = -1.57, R) >droSim1.chrX 14682579 167 + 17042790 --ACGCCCACUCACAUUACGCACACAACUGCACGCGACUGGGAAGUAAAGUGUACUGGAGGCGGAUGUAUCGAUUAUUCGAUUAUUUCUGACCUCCCCUUCAAAAGCAAAAACAAAAACACAAAGCCUGGCGAAAAAGUUGGAAAACUGAAAAGGAUGUUGCAUAUAAA --.................((((((((((.....((.(..((.((((.....))))(((((((((...(((((....)))))....)))).))))).............................))..)))....))))).....((....))..)).)))....... ( -38.10, z-score = -0.82, R) >droSec1.super_8 1295847 166 + 3762037 --ACGUCCACUCACAUUACGCACACAACUGCACGCGACUGGGAAGUAAAGUGUACUGGAGGCGGAUGUAUCGAUUAUUCGAUUAUUUCUGACCUCCCCUUCAAAAGCAAAAACAAAAACACAAGGCCUGGCGAAAAAGUUGGAAAACUGAAA-GGAUGUUGCAUAUAAA --((((((..((......(((.((...((((((...(((....)))...))))...(((((((((...(((((....)))))....)))).)))))..........................))...)))))....((((....))))))..-)))))).......... ( -41.60, z-score = -1.45, R) >droEre2.scaffold_4690 9277747 162 + 18748788 ACCCGCCCACUCACGUUACGCACACAACUGCACUCGACCGGGAAGUAAAGUGUACUGGAGGCGGAUAUAUCGAUUAUUCGAUUAUUUCUGACCUCCCCACCGAAA------GCAAAAACACAAAGCC-GGCGAAAAAGCUGGAAAACUGAAAAGGAUGUUGCAUAUAAA ...........(((.(((((((......))).(((....)))..)))).)))....(((((((((...(((((....)))))....)))).))))).........------((((..........((-(((......)))))....((....))....))))....... ( -41.70, z-score = -1.73, R) >droAna3.scaffold_12903 76957 137 - 802071 ---------------------CUGCAGCCACAAAGGGCUCACAGGAGAGCGGCACGGACCACGGAUAUAUCGAUUAUUCGAUUAAUUCUGACCUCCCAUC-----------AUCAAAGGAAGCAGCGAGAAAGUAAGGCUCGAAAUCGGCAAUAAAAACUGCACAAAAA ---------------------((((.(((.(....)((((......)))))))..(((...((((...(((((....)))))....))))...)))....-----------..........))))((((.........))))......(((........)))....... ( -30.90, z-score = -0.53, R) >consensus ___CG_CCACUCACAUUACGCACACAACUGCACGCGACUGGGAAGUAAAGUGUACUGGAGGCGGAUGUAUCGAUUAUUCGAUUAUUUCUGACCUCCCCUUCAAAA______ACAAAAACACAAAGCCUGGCGAAAAAGUUGGAAAACUGAAAAGGAUGUUGCAUAUAAA ........................(((((.....((.(((((.((((.....))))(((((((((...(((((....)))))....)))).))))).............................)))))))....)))))............................ (-22.28 = -24.08 + 1.80)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:59:13 2011