| Sequence ID | dm3.chrX |
|---|---|
| Location | 18,998,909 – 18,998,961 |
| Length | 52 |
| Max. P | 0.624114 |
| Location | 18,998,909 – 18,998,961 |
|---|---|
| Length | 52 |
| Sequences | 3 |
| Columns | 52 |
| Reading direction | forward |
| Mean pairwise identity | 97.44 |
| Shannon entropy | 0.03532 |
| G+C content | 0.50000 |
| Mean single sequence MFE | -15.67 |
| Consensus MFE | -14.45 |
| Energy contribution | -14.57 |
| Covariance contribution | 0.11 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.51 |
| Structure conservation index | 0.92 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.28 |
| SVM RNA-class probability | 0.624114 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 18998909 52 + 22422827 AAUCUCGUUGUCUACACAACGGGAGCCAGUGUCAUGCAUGGCAAUGUUUGCC ..(((((((((....)))))))))((((.((.....)))))).......... ( -17.60, z-score = -2.22, R) >droSec1.super_8 1289990 52 + 3762037 AAUCUCGUUGUCUACACACCGGGAGCCAGUGUCAUGCAUGACAAUGUUUGCC ..(((((.(((....))).)))))((((.(((((....))))).))...)). ( -11.80, z-score = -0.10, R) >droEre2.scaffold_4690 9272950 52 + 18748788 AAUCUCGUUGUCUACACAACGGGAGCCAGUGUCAUGCAUGGCAAUGUUUGCC ..(((((((((....)))))))))((((.((.....)))))).......... ( -17.60, z-score = -2.22, R) >consensus AAUCUCGUUGUCUACACAACGGGAGCCAGUGUCAUGCAUGGCAAUGUUUGCC ..(((((((((....)))))))))((((.(((((....))))).))...)). (-14.45 = -14.57 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:59:12 2011