| Sequence ID | dm3.chrX |
|---|---|
| Location | 18,994,552 – 18,994,604 |
| Length | 52 |
| Max. P | 0.506359 |
| Location | 18,994,552 – 18,994,604 |
|---|---|
| Length | 52 |
| Sequences | 3 |
| Columns | 54 |
| Reading direction | reverse |
| Mean pairwise identity | 90.12 |
| Shannon entropy | 0.13604 |
| G+C content | 0.40670 |
| Mean single sequence MFE | -7.90 |
| Consensus MFE | -7.68 |
| Energy contribution | -6.80 |
| Covariance contribution | -0.88 |
| Combinations/Pair | 1.33 |
| Mean z-score | -0.76 |
| Structure conservation index | 0.97 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.02 |
| SVM RNA-class probability | 0.506359 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 18994552 52 - 22422827 UUGAUAACUUAUUUUCGCUCCCACAACUAUGUGU--GUGGCGAUGCCGACUACU ..............((((..(((((....)))).--)..))))........... ( -10.70, z-score = -1.97, R) >droSec1.super_8 1285776 54 - 3762037 UUGAUAACUUAUUUUUGCUGCUACAACUAUGUAUCUGUGGUGAUGCCGACUACU ................((.((((((..........))))))...))........ ( -5.40, z-score = 0.10, R) >droSim1.chrU 8896718 54 - 15797150 UUGAUAACUUAUUUUCGCUGCUACAACUAUGUAUCUGUGGUGAUGCCGACUGCU ..............((((..(((((....))))...)..))))........... ( -7.60, z-score = -0.40, R) >consensus UUGAUAACUUAUUUUCGCUGCUACAACUAUGUAUCUGUGGUGAUGCCGACUACU ..............((((..(((((....))))...)..))))........... ( -7.68 = -6.80 + -0.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:59:10 2011