| Sequence ID | dm3.chrX |
|---|---|
| Location | 18,990,944 – 18,991,062 |
| Length | 118 |
| Max. P | 0.541905 |
| Location | 18,990,944 – 18,991,062 |
|---|---|
| Length | 118 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 78.55 |
| Shannon entropy | 0.35172 |
| G+C content | 0.38180 |
| Mean single sequence MFE | -27.20 |
| Consensus MFE | -15.76 |
| Energy contribution | -17.45 |
| Covariance contribution | 1.69 |
| Combinations/Pair | 1.21 |
| Mean z-score | -1.74 |
| Structure conservation index | 0.58 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.10 |
| SVM RNA-class probability | 0.541905 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 18990944 118 - 22422827 UAAUUCUGCACAAGUUUGCUUUGAGCAAUGAGGCAUUUGUCAAGCAUACGU--AUGUGCAUAUGUAUAUGGGCCGAGUCUUAAGCAUUUCAUUGCUUUUUCGUCCACAUAUUAGUCUCUU ......((((((.((.(((((.((.(((........)))))))))).))..--.)))))).....(((((((.((((....(((((......))))).)))).)).)))))......... ( -30.70, z-score = -1.68, R) >droEre2.scaffold_4690 9266008 96 - 18748788 CAAUUCCGUACAAGUUUGCGUUGAGCAAUGAGACACUUGCCAA------------------AUACAAAUAGGC---GUCUUUAACGUUUCAAUGGUUUUGCGACCUGAUAUUAGUCU--- (((..((((......((((.....))))((((((....(((..------------------.........)))---((.....))))))))))))..))).(((.........))).--- ( -18.10, z-score = 0.21, R) >droSec1.super_8 1282323 120 - 3762037 UAAUUCCGCACAAGUUUGCGUUGAGCAAUGAGGCAUUUGUCAAACAUAUGUACACAUACAUACAUAUGUGGGCCUAGUCUUAAGCAUUUCAUUGCUUUUUCGUCCACAUAUUAGUCUCUU ......((((......)))).........(((((............((((((....)))))).((((((((((........(((((......)))))....))))))))))..))))).. ( -30.00, z-score = -2.74, R) >droSim1.chrX_random 4922152 120 - 5698898 UAAUUCCGCACAAGUUUGCGUUGAGCAAUGAGGCAUUUGUCAAACAUAUGUACACAUACAUACAUAUGUGGGCCUAGUCUUAAGCAUUUCAUUGCUUUUUCGUCCACAUAUUAGUCUCUU ......((((......)))).........(((((............((((((....)))))).((((((((((........(((((......)))))....))))))))))..))))).. ( -30.00, z-score = -2.74, R) >consensus UAAUUCCGCACAAGUUUGCGUUGAGCAAUGAGGCAUUUGUCAAACAUAUGU__ACAUACAUACAUAUAUGGGCCUAGUCUUAAGCAUUUCAUUGCUUUUUCGUCCACAUAUUAGUCUCUU ...............((((.....)))).(((((............((((....)))).....((((((((((........(((((......)))))....))))))))))..))))).. (-15.76 = -17.45 + 1.69)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:59:09 2011