| Sequence ID | dm3.chrX |
|---|---|
| Location | 18,987,672 – 18,987,724 |
| Length | 52 |
| Max. P | 0.887878 |
| Location | 18,987,672 – 18,987,724 |
|---|---|
| Length | 52 |
| Sequences | 3 |
| Columns | 52 |
| Reading direction | forward |
| Mean pairwise identity | 92.26 |
| Shannon entropy | 0.10596 |
| G+C content | 0.53268 |
| Mean single sequence MFE | -16.99 |
| Consensus MFE | -14.39 |
| Energy contribution | -14.72 |
| Covariance contribution | 0.33 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.20 |
| Structure conservation index | 0.85 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.08 |
| SVM RNA-class probability | 0.887878 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 18987672 52 + 22422827 AUAAUGCCCGCCACUCCAAAAUUCGUGGGCAGAAUGGCUGAAGCGAAGUCUU ....(((((((.............)))))))....((((.......)))).. ( -13.52, z-score = -0.87, R) >droEre2.scaffold_4690 9262800 51 + 18748788 AUAAUGCCCGCCACUCCAAAAUUCGUGGGCAGAAUGGCUCAAGCCA-GUCGU ....(((((((.............)))))))((.((((....))))-.)).. ( -18.22, z-score = -3.11, R) >droSec1.super_8 1279067 51 + 3762037 AUAAUGCCCGCCACUCCGAAAUUCGUGGGCAGAACGGCUGAAGCCA-GUCGU ....(((((((.............)))))))..(((((((....))-))))) ( -19.22, z-score = -2.62, R) >consensus AUAAUGCCCGCCACUCCAAAAUUCGUGGGCAGAAUGGCUGAAGCCA_GUCGU ....(((((((.............)))))))((..(((....)))...)).. (-14.39 = -14.72 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:59:08 2011