| Sequence ID | dm3.chrX |
|---|---|
| Location | 18,987,297 – 18,987,411 |
| Length | 114 |
| Max. P | 0.778717 |
| Location | 18,987,297 – 18,987,411 |
|---|---|
| Length | 114 |
| Sequences | 5 |
| Columns | 114 |
| Reading direction | forward |
| Mean pairwise identity | 64.43 |
| Shannon entropy | 0.64270 |
| G+C content | 0.39826 |
| Mean single sequence MFE | -26.14 |
| Consensus MFE | -8.02 |
| Energy contribution | -9.27 |
| Covariance contribution | 1.25 |
| Combinations/Pair | 1.56 |
| Mean z-score | -1.94 |
| Structure conservation index | 0.31 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.66 |
| SVM RNA-class probability | 0.778717 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 18987297 114 + 22422827 GAAGUGAUAGCAAAAGCAAUGGUGUCCAAAAGUAGUCAACACUAUUGGUUAAGUACGCCAUAUUCAUUCCGAACGAUGGAGUCUCACAUUGAUACUGUCCCCUUUUGAUCAUCU ...(((((..((((((..(((((((((((.(((.(....)))).))))......))))))).............(((((.(((.......))).)))))..))))))))))).. ( -23.80, z-score = -0.48, R) >droEre2.scaffold_4690 9261203 102 + 18748788 GAACUGAUAGCAAAUGUUAUGGUGACCAAAAGUAGGCAACAAUAUUGCUUAAGUGGAACCAAUUCGC----------AAAGGC--ACAAUGUUACUGCCUACUCUUGAACACCU ......(((((....)))))((((..(((.((((((((..((((((((((..(((((.....)))))----------..))))--)..)))))..)))))))).)))..)))). ( -33.30, z-score = -4.48, R) >droYak2.chrX 17585667 98 + 21770863 CAACUGAUAGCACACGUAAUGGUGUCCAGAAAUGGGCA--GCUAUU-UUGGAGCAACUUAAAAACAACUAGUUUGUCAAAGUC--CUUUCCAUGUUUACACUU----------- .....((((((.((.....)).((((((....))))))--))))))-.(((((..((((..((((.....))))....)))).--..)))))...........----------- ( -21.00, z-score = -0.61, R) >droSec1.super_8 1278635 104 + 3762037 GAAGUGAUACCAAA-----UGGUGUCCAAAAGUAACCA---CUAUUGGUUAAGUAUGACAUAUUCAUUUCGAACGAUGGAGUC--ACAUUGAUACUGCCCCCUUUUGAUCACCU ((...((((((...-----.))))))((((((((((((---....))))))(((((......(((.....)))(((((.....--.)))))))))).....)))))).)).... ( -24.10, z-score = -1.58, R) >droSim1.chrX_random 4920272 104 + 5698898 GAAGUGAUAGCAAA-----UGGUGUCCAAAAGUAACCA---CUAUUGGUUAAGUGUGACAUAUUCAUUUCGAACGAUGGAGUC--ACAUUGAUACUGCCCCCUUUUGAUCACCU ..............-----.((((..((((((((((((---....))))))((((((((...((((((......)))))))))--)))))...........))))))..)))). ( -28.50, z-score = -2.53, R) >consensus GAAGUGAUAGCAAA_G__AUGGUGUCCAAAAGUAGCCA___CUAUUGGUUAAGUAUGACAUAUUCAUUUCGAACGAUGGAGUC__ACAUUGAUACUGCCCCCUUUUGAUCACCU ....................((((..((((((((((((.......))))))(((((.........((((((.....)))))).........))))).....))))))..)))). ( -8.02 = -9.27 + 1.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:59:07 2011