| Sequence ID | dm3.chrX |
|---|---|
| Location | 18,980,874 – 18,980,934 |
| Length | 60 |
| Max. P | 0.851739 |
| Location | 18,980,874 – 18,980,934 |
|---|---|
| Length | 60 |
| Sequences | 4 |
| Columns | 62 |
| Reading direction | reverse |
| Mean pairwise identity | 82.79 |
| Shannon entropy | 0.27479 |
| G+C content | 0.54987 |
| Mean single sequence MFE | -11.72 |
| Consensus MFE | -9.36 |
| Energy contribution | -8.68 |
| Covariance contribution | -0.69 |
| Combinations/Pair | 1.27 |
| Mean z-score | -1.71 |
| Structure conservation index | 0.80 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.92 |
| SVM RNA-class probability | 0.851739 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 18980874 60 - 22422827 --GUCCUGUUCCCGUACCGCUGUCAAUGUCCCUGCCAUUGUCCUUUCUCAGCUGUCAUGGCA --.........((((((.((((.(((((.......)))))........)))).)).)))).. ( -11.00, z-score = -1.88, R) >droSim1.chrU 1693470 60 + 15797150 --GUCCCGUUCCCGUACCGCUGUCAAUGUCCCUGCCAUUGUCCUUUCUCAGCUGUCAUGGCA --.........((((((.((((.(((((.......)))))........)))).)).)))).. ( -11.00, z-score = -1.99, R) >droSec1.super_8 1272316 60 - 3762037 --GUCCCGUUCCCGUACCGCUGUCAAUGUCCCUGCCAUUGUCCUUUCUCAGCUGUCAUGGCA --.........((((((.((((.(((((.......)))))........)))).)).)))).. ( -11.00, z-score = -1.99, R) >droAna3.scaffold_12903 54408 62 + 802071 UCCGUCCGAUCUCGAACCGCUGUCAAUGUCCUUGCCAUUGUCCUUAAAUGGCAGUUUGGGUG ..........(((((((.((.......))...(((((((.......)))))))))))))).. ( -13.90, z-score = -1.00, R) >consensus __GUCCCGUUCCCGUACCGCUGUCAAUGUCCCUGCCAUUGUCCUUUCUCAGCUGUCAUGGCA ...........((((((.((((.(((((.......)))))........)))).)).)))).. ( -9.36 = -8.68 + -0.69)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:59:04 2011