| Sequence ID | dm3.chrX |
|---|---|
| Location | 18,973,182 – 18,973,288 |
| Length | 106 |
| Max. P | 0.532346 |
| Location | 18,973,182 – 18,973,288 |
|---|---|
| Length | 106 |
| Sequences | 4 |
| Columns | 109 |
| Reading direction | forward |
| Mean pairwise identity | 88.16 |
| Shannon entropy | 0.19187 |
| G+C content | 0.36481 |
| Mean single sequence MFE | -24.38 |
| Consensus MFE | -19.61 |
| Energy contribution | -19.93 |
| Covariance contribution | 0.31 |
| Combinations/Pair | 1.14 |
| Mean z-score | -1.57 |
| Structure conservation index | 0.80 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.08 |
| SVM RNA-class probability | 0.532346 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 18973182 106 + 22422827 UUGUUUUGAAUUUCCAUCAUUAAAUUUGUUUUUACGAGUAUU---UGAUGGUGCCGUAACUAGUUUUCUAUGGGCCGAAAAUGGACUUAAGUCUUUCGGUUCUUCGUAU ..(((.((.....((((((....((((((....))))))...---))))))...)).)))...........((((((((...((((....))))))))))))....... ( -24.40, z-score = -1.96, R) >droSim1.chrX 14668408 108 + 17042790 UUGUUUUGAAUUUCCAUCGUUAAAUUUGUUGU-ACGAGUAUUAUUUGAUGGUGCCGUGACUAGUUUUCUAUGUGCCGAAAACGGACUUAAGUCUUUCGGUUCUUCGUAU ..(((.((.....((((((.((((((((....-.))))).)))..))))))...)).)))........((((.((((((...((((....))))))))))....)))). ( -21.50, z-score = -0.60, R) >droSec1.super_8 1264280 105 + 3762037 UUGUUUUGAAUUUCCAUCGUUAAAUUUGUUGA-ACGAGUAUU---UGAUGGAGCCGAAACCAGUUUUCUAUGGGCCGAAAACGGACUUAAGUCUUUCGGUUCUUCGUAU ..((((((...((((((((....(((((....-.)))))...---)))))))).))))))...........((((((((...((((....))))))))))))....... ( -28.30, z-score = -1.93, R) >droEre2.scaffold_4690 9247739 98 + 18748788 UUGUUUUGAAUUUCCAUCAUUAAAUU-GUU-------GUAUU---UGAUGGUGCCGUAACUAGUUUGCUAUGAGCCGAAAACGGAUUUAAGUCUCUCGGUUCUGCGUGU ..............(((((((((((.-...-------..)))---)))))))).((((..(((....))).(((((((....((((....)))).)))))))))))... ( -23.30, z-score = -1.79, R) >consensus UUGUUUUGAAUUUCCAUCAUUAAAUUUGUUGU_ACGAGUAUU___UGAUGGUGCCGUAACUAGUUUUCUAUGGGCCGAAAACGGACUUAAGUCUUUCGGUUCUUCGUAU ..(((.((.....((((((....(((((......)))))......))))))...)).)))...........((((((((...((((....))))))))))))....... (-19.61 = -19.93 + 0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:58:58 2011