| Sequence ID | dm3.chrX |
|---|---|
| Location | 18,951,925 – 18,951,975 |
| Length | 50 |
| Max. P | 0.768267 |
| Location | 18,951,925 – 18,951,975 |
|---|---|
| Length | 50 |
| Sequences | 4 |
| Columns | 50 |
| Reading direction | reverse |
| Mean pairwise identity | 99.00 |
| Shannon entropy | 0.01623 |
| G+C content | 0.40500 |
| Mean single sequence MFE | -8.25 |
| Consensus MFE | -8.10 |
| Energy contribution | -8.35 |
| Covariance contribution | 0.25 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.33 |
| Structure conservation index | 0.98 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.63 |
| SVM RNA-class probability | 0.768267 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 18951925 50 - 22422827 CCUUCGUUUAGUUUCAUUUCAGUUAAUCGCAGUACGCAGCUGCAUUGAUU ....................(((((((.(((((.....)))))))))))) ( -9.40, z-score = -1.92, R) >droYak2.chrX 17558041 50 - 21770863 CCUUCGUUUAGUUUCAUUUCAGUUAAUCGCCGUACGCAGCUGCAUUGAUU ....................(((((((.((.((.....)).))))))))) ( -4.80, z-score = 0.43, R) >droSec1.super_8 1245682 50 - 3762037 CCUUCGUUUAGUUUCAUUUCAGUUAAUCGCAGUACGCAGCUGCAUUGAUU ....................(((((((.(((((.....)))))))))))) ( -9.40, z-score = -1.92, R) >droSim1.chrX_random 4910054 50 - 5698898 CCUUCGUUUAGUUUCAUUUCAGUUAAUCGCAGUACGCAGCUGCAUUGAUU ....................(((((((.(((((.....)))))))))))) ( -9.40, z-score = -1.92, R) >consensus CCUUCGUUUAGUUUCAUUUCAGUUAAUCGCAGUACGCAGCUGCAUUGAUU ....................(((((((.(((((.....)))))))))))) ( -8.10 = -8.35 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:58:54 2011