| Sequence ID | dm3.chrX |
|---|---|
| Location | 18,948,573 – 18,948,664 |
| Length | 91 |
| Max. P | 0.636944 |
| Location | 18,948,573 – 18,948,664 |
|---|---|
| Length | 91 |
| Sequences | 3 |
| Columns | 91 |
| Reading direction | forward |
| Mean pairwise identity | 92.57 |
| Shannon entropy | 0.10091 |
| G+C content | 0.55394 |
| Mean single sequence MFE | -26.50 |
| Consensus MFE | -24.73 |
| Energy contribution | -25.07 |
| Covariance contribution | 0.33 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.27 |
| Structure conservation index | 0.93 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.31 |
| SVM RNA-class probability | 0.636944 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 18948573 91 + 22422827 GGGACAGGGUCGCCGGCUCAUGACCAUCAGUGGCUCAUUAGCUGGGGGCCGAGCGAGUCGAAAAAGCAAAAAAAAAAUUAGGAAGAAAGGC .......((((.((((((.(((((((....))).)))).)))))).))))..((...........))........................ ( -26.60, z-score = -1.50, R) >droSec1.super_8 1242293 85 + 3762037 GGGACAGGGUCGCCGGCUCAUGACCAUCAGUGGCUCAUUAGCUGGGGGCCGAGCGAGGCGAAAAAGCAAAAAA----UUAGGAAGAAAG-- .......((((.((((((.(((((((....))).)))).)))))).)))).......((......))......----............-- ( -27.60, z-score = -1.87, R) >droEre2.scaffold_4690 9230176 86 + 18748788 GGGACAGGGUCGCCGGCUCAUGACCAUCAGUGGCUCAUUAGCUGGGG-CCGAGCGAGGCGAAAAGGCAAAAAA----UUGGGAAGAAAGGC ....(((((((.((((((.(((((((....))).)))).))))))))-)).......((......))......----)))........... ( -25.30, z-score = -0.43, R) >consensus GGGACAGGGUCGCCGGCUCAUGACCAUCAGUGGCUCAUUAGCUGGGGGCCGAGCGAGGCGAAAAAGCAAAAAA____UUAGGAAGAAAGGC .......((((.((((((.(((((((....))).)))).)))))).))))..((...........))........................ (-24.73 = -25.07 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:58:53 2011