| Sequence ID | dm3.chrX |
|---|---|
| Location | 18,947,690 – 18,947,771 |
| Length | 81 |
| Max. P | 0.754882 |
| Location | 18,947,690 – 18,947,771 |
|---|---|
| Length | 81 |
| Sequences | 5 |
| Columns | 95 |
| Reading direction | forward |
| Mean pairwise identity | 72.74 |
| Shannon entropy | 0.46560 |
| G+C content | 0.42796 |
| Mean single sequence MFE | -18.20 |
| Consensus MFE | -11.32 |
| Energy contribution | -11.96 |
| Covariance contribution | 0.64 |
| Combinations/Pair | 1.31 |
| Mean z-score | -1.26 |
| Structure conservation index | 0.62 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.59 |
| SVM RNA-class probability | 0.754882 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 18947690 81 + 22422827 UAAGAAGUAGAAGAAUAAUACAAAAUAACAACAAGCCAGGUCAAAGGCCACGAGUAUCUCAAUCGUGUUUGUUGGGCGAAC-------------- ......(((.........))).......((((((((..(((.....)))((((.........)))))))))))).......-------------- ( -15.40, z-score = -1.66, R) >droYak2.chrX 17553626 87 + 21770863 UAAGAAGUUCAAGAAUAAUGCAAAAUAAUAACGAGCCAGGCCAAAGGCCACGAGCAUCUCAAUCGUGCGUGUUGCUGUAUUUGCUGG-------- ...........((...((((((.((((...((((....((((...))))..(((...)))..))))...))))..))))))..))..-------- ( -19.00, z-score = -0.13, R) >droSec1.super_8 1241385 81 + 3762037 UAAGAAGUAGAAGAAUAAUACAAAAUAACAACAAACCAGGCCAAAGGCCACGAGUAUCUCAAUCGUGUUUGUUGGGCGAAC-------------- ......(((.........))).......((((((((..((((...))))((((.........)))))))))))).......-------------- ( -17.80, z-score = -2.61, R) >droSim1.chrX_random 4907759 81 + 5698898 UAAGAAGUAGAAGAAUAAUACAAAAUAGCAACAAACCAGGCCAAAGGCCACGAGUAUCUCAAUCGUGUUUGUUGGGCGAAC-------------- ......(((.........))).......((((((((..((((...))))((((.........)))))))))))).......-------------- ( -17.50, z-score = -2.26, R) >droPer1.super_14 87533 91 + 2168203 GAUGGAGCCGGAGAGCAAU----AAUAAUAACAAGCCAGGACAAGGCCCAAGAGUAUCUCAAUCCUGUUGUAUCUGCUGCUGCUGCUGCCCCAAC ..(((.((.(.((((((.(----(...((((((.(((.......)))....(((...))).....))))))...)).)))).)).).)).))).. ( -21.30, z-score = 0.38, R) >consensus UAAGAAGUAGAAGAAUAAUACAAAAUAACAACAAGCCAGGCCAAAGGCCACGAGUAUCUCAAUCGUGUUUGUUGGGCGAAC______________ ............................((((((((..((((...))))((((.........))))))))))))..................... (-11.32 = -11.96 + 0.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:58:53 2011