Locus 15415

Sequence ID dm3.chrX
Location 18,926,785 – 18,926,893
Length 108
Max. P 0.982989
window21233

overview

Window 3

Location 18,926,785 – 18,926,893
Length 108
Sequences 4
Columns 118
Reading direction reverse
Mean pairwise identity 91.59
Shannon entropy 0.13119
G+C content 0.48611
Mean single sequence MFE -30.50
Consensus MFE -27.25
Energy contribution -26.57
Covariance contribution -0.69
Combinations/Pair 1.12
Mean z-score -2.61
Structure conservation index 0.89
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 2.12
SVM RNA-class probability 0.982989
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chrX 18926785 108 - 22422827
CUUCUCGGGCUAUGAUGACAAAAGAAUCUGCUGCACUAAUUGCUGCAUAACUCGAC----------UGUGUGUGGCUUUUAUGUUCGCUCCUCUGUUCUUUGGCCUCCCUGUCAUCGU
...........((((((((((((((((..((.(((.(((..((..((((.(.....----------.)))))..))..))))))..))......)))))))((....))))))))))) ( -27.20, z-score =  -2.17, R)
>droSim1.chrX 14647043 108 - 17042790
CUUCUCGGGCUGUGAUGACAAAAGAAUCUGCUGCACUAAUUGCUGCAUAACUCGAC----------UGUAUGUGGCUUUUAUGUUCGCUCCUCUGUUCUUUGGCCUCCCUGUCAUCGC
...........((((((((((((((((..((.(((.(((..((..((((.(.....----------.)))))..))..))))))..))......)))))))((....))))))))))) ( -28.60, z-score =  -2.59, R)
>droSec1.super_8 1221044 108 - 3762037
CUUCUCGGGCUGGGAUGACAAAAGAAUCUGCUGCACUAAUUGCUGCAUAACUCGAC----------UGUAUGUGGCUUUUAUGUUCGCUCCUCUGUUCUUUGGCCUCCCUGUCAUCGC
.......(((.((((.(...(((((((..((.(((.(((..((..((((.(.....----------.)))))..))..))))))..))......)))))))..).)))).)))..... ( -28.90, z-score =  -1.91, R)
>droYak2.chrX 17533577 118 - 21770863
CUUCUCGGACUGCGAUGACAAAAGAAUCUGCUGCACUAAUUGCUGCAUAACUCCACUGUGUGUGUGUGUGUGUGGCUUUUAUGCUCGCUGCUCUGUUCUUUGGCCUCCCUGUCAUCGC
...........((((((((((((((((..((.(((.(((..((..((((...((((.....))).)..))))..))..)))))).....))...)))))))((....))))))))))) ( -37.30, z-score =  -3.76, R)
>consensus
CUUCUCGGGCUGUGAUGACAAAAGAAUCUGCUGCACUAAUUGCUGCAUAACUCGAC__________UGUAUGUGGCUUUUAUGUUCGCUCCUCUGUUCUUUGGCCUCCCUGUCAUCGC
...........((((((((((((((((..((.(((.(((..((..((((.(................)))))..))..))))))..))......)))))))((....))))))))))) (-27.25 = -26.57 +  -0.69)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:58:47 2011