| Sequence ID | dm3.chrX |
|---|---|
| Location | 18,916,226 – 18,916,378 |
| Length | 152 |
| Max. P | 0.597822 |
| Location | 18,916,226 – 18,916,378 |
|---|---|
| Length | 152 |
| Sequences | 5 |
| Columns | 169 |
| Reading direction | reverse |
| Mean pairwise identity | 66.46 |
| Shannon entropy | 0.59109 |
| G+C content | 0.60488 |
| Mean single sequence MFE | -57.30 |
| Consensus MFE | -20.61 |
| Energy contribution | -24.53 |
| Covariance contribution | 3.92 |
| Combinations/Pair | 1.16 |
| Mean z-score | -1.64 |
| Structure conservation index | 0.36 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.22 |
| SVM RNA-class probability | 0.597822 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 18916226 152 - 22422827 CCCUCCUAAAAACGUCAUGGCAACCCAACCCCAACCCUCUCCGGCCACCUUUAACCCCGCGCGCCCCUGUUGGCCAGGUGA-AAUGGGGGGA----------------GAGGGAAGCACCUGCCCAGCCGACAAUAGUGCGGAAAUAUUAAAUCUGCGCGUCAGGCGAA ............((((..(((.............((((((((((...)).....(((((..((((((....))...)))).-..))))))))----------------)))))..((....))...)))(((....(((((((.........)))))))))).)))).. ( -53.30, z-score = -1.05, R) >droSim1.chrX 14634793 163 - 17042790 CCCUCCUAAAAACGUCAUGGCAACCCAACC----CCCUCUCCGGCCACCUUUGACCCCGCGC-CCCUGGUGGCCNAGGUGA-ACGGGGGGGAGGGGGUCCUGGANGCUGGGGGAAGCACCUGCCCAGCCGACAAUAGUGCGGAAAUAUUAAAUCUGCGCGUCAGGCGAA ............((((.((((...((((((----(((((((((((((((.............-....)))))))...(...-.)...)))))))))))..)))..((((((((.....))..))))))........(((((((.........))))))))))))))).. ( -68.63, z-score = 0.12, R) >droSec1.super_8 1210411 160 - 3762037 CCCUCCUAAAAACGUCAUGACAACCCAACC----CCCUCUCCGGCCACCUUUGACCCCGCGC-CCCUGGUGG-CCAGGUGA-ACGGGGGGAGGGGG--UCUGGAGGCUGGGGGAAGCACCUGCCCAGCCGACAAUAGUGCGGAAAUAUUAAAUCUGCGCGUCAGGCGAA ............((((.((((...((((((----(((((((((((((((.............-....)))))-))..(...-.)..))))))))))--).))).(((((((((.....))..))))))).......(((((((.........))))))))))))))).. ( -76.23, z-score = -2.83, R) >droYak2.chrX 17522796 143 - 21770863 CUCCCCUGAAAACGUCAUGGCAACACC-------CCAUCCCCCCCCCCCCC------------UCCUGGUGG-CCAGGUGA-AAAGGGGUGAUGAG-----GGAGGGCAGAGGAAGCACCUGCCCAGCCGACAAUAGUGCGGAAAUAUUAAAUCUGCGCGUCAGGCGAA .((.(((((....(((..(((....((-------(((((.((((.......------------.(((((...-)))))...-...)))).)))).)-----)).((((((.(......))))))).))))))....(((((((.........))))))).))))).)). ( -62.14, z-score = -3.43, R) >droPer1.super_14 49621 131 - 2168203 ------------UGCCACAUCCCCCCCAC-----CCCUACCCCUCCCCCUCCG----------CCCAGACCUCUCUGACAAUGUCAUGGCAACACCUUUCCCCCAGCAAAGGGGAGC---------CCCGACAAUAGUGCGGAAAUAUUAAAUCUGCGCUUCA--CGAA ------------.................-----...................----------..((((....))))....((((.((....))...((((((.......)))))).---------...))))..((((((((.........))))))))...--.... ( -26.20, z-score = -1.03, R) >consensus CCCUCCUAAAAACGUCAUGGCAACCCAACC____CCCUCUCCGGCCACCUUUGACCCCGCGC_CCCUGGUGG_CCAGGUGA_AAGGGGGGGAGGGG___C_GGA_GCUGGGGGAAGCACCUGCCCAGCCGACAAUAGUGCGGAAAUAUUAAAUCUGCGCGUCAGGCGAA ............((((.((((.............(((((.....((........((((......(((((....))))).......))))............)).....))))).......................(((((((.........))))))))))))))).. (-20.61 = -24.53 + 3.92)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:58:47 2011