| Sequence ID | dm3.chrX |
|---|---|
| Location | 18,914,520 – 18,914,614 |
| Length | 94 |
| Max. P | 0.537146 |
| Location | 18,914,520 – 18,914,614 |
|---|---|
| Length | 94 |
| Sequences | 3 |
| Columns | 94 |
| Reading direction | reverse |
| Mean pairwise identity | 77.78 |
| Shannon entropy | 0.31167 |
| G+C content | 0.41483 |
| Mean single sequence MFE | -16.93 |
| Consensus MFE | -14.29 |
| Energy contribution | -14.07 |
| Covariance contribution | -0.22 |
| Combinations/Pair | 1.07 |
| Mean z-score | -0.96 |
| Structure conservation index | 0.84 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.09 |
| SVM RNA-class probability | 0.537146 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 18914520 94 - 22422827 UCCCAUUUCUUAGGUGAAUUUAUACUUUUUUUGAUCAGUGCAAUAUUUUCUGCCAGUGCAGAACCAACGCUUUGGCACCUUUAGUUCCCCAAUU ........((.(((((...............................((((((....))))))((((....)))))))))..)).......... ( -14.60, z-score = -0.38, R) >droSec1.super_8 1208722 91 - 3762037 --CCAUUUCUUAGGUGAGUAUAUAC-AUUCUCGAUCAGUGCACUUUUUUCUGCCAGUGCGGAACCAACGCUUUGGCACCUUUGCUUGCCCAAUU --..........((..((((....(-(((.......))))..........((((((.(((.......))).))))))....))))..))..... ( -21.50, z-score = -1.40, R) >droSim1.chrX 14633124 73 - 17042790 --UCAUUUCUUAGGUGAAUAUAUAC-------------------UUUUUCUGCCAGUGCAGAACCAACGCUUUGGCACCUUUGCUUGCCCAAUU --......(..(((((.........-------------------...((((((....))))))((((....)))))))))..)........... ( -14.70, z-score = -1.09, R) >consensus __CCAUUUCUUAGGUGAAUAUAUAC__UU_U_GAUCAGUGCA_UUUUUUCUGCCAGUGCAGAACCAACGCUUUGGCACCUUUGCUUGCCCAAUU ...........(((((...............................((((((....))))))((((....))))))))).............. (-14.29 = -14.07 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:58:46 2011