| Sequence ID | dm3.chrX |
|---|---|
| Location | 18,901,944 – 18,902,037 |
| Length | 93 |
| Max. P | 0.807366 |
| Location | 18,901,944 – 18,902,037 |
|---|---|
| Length | 93 |
| Sequences | 8 |
| Columns | 112 |
| Reading direction | reverse |
| Mean pairwise identity | 73.74 |
| Shannon entropy | 0.48630 |
| G+C content | 0.43326 |
| Mean single sequence MFE | -19.60 |
| Consensus MFE | -11.94 |
| Energy contribution | -11.91 |
| Covariance contribution | -0.03 |
| Combinations/Pair | 1.25 |
| Mean z-score | -1.27 |
| Structure conservation index | 0.61 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.75 |
| SVM RNA-class probability | 0.807366 |
| Prediction | RNA |
| WARNING | Out of training range. z-scores are NOT reliable. |
Download alignment: ClustalW | MAF
>dm3.chrX 18901944 93 - 22422827 ------CCUCUUCUCAUCCAUUUUUGCUAGCUGCAUUUGAAUGCCUCAGCU---------GCCUGCUGGCAAUUCGAUUUCAUGCUGCAAUUUAAUUUGCUUCACUCU---- ------.................((((((((.(((.((((.....)))).)---------))..))))))))..........((..((((......))))..))....---- ( -22.00, z-score = -1.87, R) >droSim1.chrX 14607917 99 - 17042790 CCCUUCCCCCUUCUCAUCCAUUUUUGCUCUCUGCAUUUGAAUGCCUCAGCU---------GCCUGCUGGCAAUUCGAUUUCAUGCUGCAAUUUAAUUUGCUUCACUCU---- ........................(((.....))).(((((((((..(((.---------....)))))).)))))).....((..((((......))))..))....---- ( -17.40, z-score = -1.50, R) >droSec1.super_8 1196283 93 - 3762037 ------CCCCUUCUCAUCCAUUUUUGCUCUCUGCAUUUGAAUGCCUCAGCU---------GCCUGCUGGCAAUUCGAUUUCAUGCUGCAAUUUAAUUUGCUUCACUCU---- ------..................(((.....))).(((((((((..(((.---------....)))))).)))))).....((..((((......))))..))....---- ( -17.40, z-score = -1.12, R) >droYak2.chrX 17508452 97 - 21770863 --ACCCUUCUCAUCCAUCCAUUUUUGCUCUCUGCAUUUGAAUGCCUCAGCU---------GCCUGCUGGCAAUUCGAUUUCAUGCAGCAAUUUAAUUUGCUUCACUCU---- --.............................((((((((((((((..(((.---------....)))))).))))))....)))))((((......))))........---- ( -18.70, z-score = -1.32, R) >droAna3.scaffold_13047 1782344 108 - 1816235 ---CCGCAUCCUAGCAGCCC-UCCUGGCCACGUUAUUUGAAUGCCUCAGCUGGUGCCUCCGGCUGCCGGCAAUUCGAUUUCGGGAUGCAAUUUAAUUUGCUUCACUUUGGCU ---..((((((.....(((.-....)))..((....(((((((((.(((((((.....)))))))..))).))))))...))))))))..........(((.......))). ( -37.80, z-score = -2.00, R) >dp4.chrXL_group1e 10592405 78 - 12523060 ---------------------AUCCACGUUCUGUAUUUGAAUGCCUCAGCU---------GCCUGCUGGCAAUUCGAUUUCAUGCUGCAAUUUAAUUUGCUUCACUUU---- ---------------------..........((...(((((((((..(((.---------....)))))).))))))...))((..((((......))))..))....---- ( -15.90, z-score = -1.07, R) >droPer1.super_813 4919 78 - 8407 ---------------------AUCCACGUUCUGUAUUUGAAUGCCUCAGCU---------GCCUGCUGGCAAUUCGAUUUCAUGCUGCAAUUUAAUUUGCUUCACUUU---- ---------------------..........((...(((((((((..(((.---------....)))))).))))))...))((..((((......))))..))....---- ( -15.90, z-score = -1.07, R) >droWil1.scaffold_181096 4295359 80 + 12416693 -----------CUGCAACCA-UUUUGCUUGCUGUAUUUCAAUGCCUCAGC----------------UGGCAAUUCGAUUUCAUAUUACAAUUUAAUUUGCUUCACUUU---- -----------..((((...-..(((((.((((.............))))----------------.)))))...(....)...............))))........---- ( -11.72, z-score = -0.18, R) >consensus ______C__C_UCUCAUCCA_UUUUGCUCUCUGCAUUUGAAUGCCUCAGCU_________GCCUGCUGGCAAUUCGAUUUCAUGCUGCAAUUUAAUUUGCUUCACUCU____ ................................(((((((((((((..(((..............)))))).))))))....)))).((((......))))............ (-11.94 = -11.91 + -0.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:58:45 2011