| Sequence ID | dm3.chrX |
|---|---|
| Location | 18,900,663 – 18,900,754 |
| Length | 91 |
| Max. P | 0.841615 |
| Location | 18,900,663 – 18,900,754 |
|---|---|
| Length | 91 |
| Sequences | 4 |
| Columns | 96 |
| Reading direction | reverse |
| Mean pairwise identity | 70.80 |
| Shannon entropy | 0.46324 |
| G+C content | 0.66411 |
| Mean single sequence MFE | -28.60 |
| Consensus MFE | -20.06 |
| Energy contribution | -20.00 |
| Covariance contribution | -0.06 |
| Combinations/Pair | 1.18 |
| Mean z-score | -1.17 |
| Structure conservation index | 0.70 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.88 |
| SVM RNA-class probability | 0.841615 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 18900663 91 - 22422827 CGCACAACAUAGGCUAGUGGGCGGCCCAAGAGGGGGCGUGGCUGGCCAAGAGAGGGCGGUGCGACCAUAAGGGGACGCGUG-----GGUGGAUCAC (((((......(((((((.(.((.(((.....))).))).)))))))..(......).))))).((((..(....)..)))-----)......... ( -35.80, z-score = -2.17, R) >droSim1.chrX 14606519 80 - 17042790 -----------GGCACAAGGGCGGCCCAAGAGGGGGCGUGGCUGGCCAAGAGAGGGCGGUGCGGUCAUAAAGGGACGCGUG-----GGUGGAUCAC -----------..(((..(.(((.(((......((.((((.(((.((......)).))))))).)).....))).))).).-----.)))...... ( -27.60, z-score = -1.09, R) >droSec1.super_8 1194838 73 - 3762037 ------------------GGGCGGCCCAAGAGGGGGCGUGGCUGGCCAAGAGAGGGCGGUGCGGUCAUAAAGGGACGCGUG-----GGUGGAUCAC ------------------..(((.(((.....))).))).((((.((......)).))))(((..(......)..)))(((-----(.....)))) ( -24.50, z-score = -0.68, R) >droEre2.scaffold_4690 9181787 95 - 18748788 UACAC-ACACACAAAACUUUUCGAGGCACAAGGGGGCGUGGCUGGCCAAGAGAGGUCGGCGUGGCCAAAAUGGGGCACGGACAGGUGGGGGAUCAC ..(((-.(((.(....(((((........))))).).)))(((((((......)))))))(((.((......)).)))......)))......... ( -26.50, z-score = -0.74, R) >consensus ___________GGCAA_UGGGCGGCCCAAGAGGGGGCGUGGCUGGCCAAGAGAGGGCGGUGCGGCCAUAAAGGGACGCGUG_____GGUGGAUCAC ....................(((.(((.....))).))).((((.((......)).))))(((.((......)).))).................. (-20.06 = -20.00 + -0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:58:44 2011