Locus 15410

Sequence ID dm3.chrX
Location 18,896,917 – 18,896,977
Length 60
Max. P 0.883692
window21227 window21228

overview

Window 7

Location 18,896,917 – 18,896,977
Length 60
Sequences 5
Columns 60
Reading direction forward
Mean pairwise identity 98.67
Shannon entropy 0.02406
G+C content 0.38130
Mean single sequence MFE -11.86
Consensus MFE -11.10
Energy contribution -11.30
Covariance contribution 0.20
Combinations/Pair 1.00
Mean z-score -1.89
Structure conservation index 0.94
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 1.06
SVM RNA-class probability 0.883692
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chrX 18896917 60 + 22422827
AUCGUCACGAUGAUCAUUAUCAUCAUUUGCAGAGGUUACACUCAACUUCUUAGGAGCUUA
...((..(((((((....))))))......(((((((......)))))))..)..))... ( -12.20, z-score =  -1.99, R)
>droSim1.chrX 14602858 60 + 17042790
AUCGUCACGAUGAUCAUUAUCAUCAUUUGCAGAGGUUACACUCAACUUCUUAGGAGCUUA
...((..(((((((....))))))......(((((((......)))))))..)..))... ( -12.20, z-score =  -1.99, R)
>droSec1.super_8 1191350 60 + 3762037
AUCGUCACGAUGAUCAUUAUCAUCAUUUGCAGAGGUUACACUCAACUUAUUAGGAGCUUA
...((..(((((((....)))))).......(((......))).........)..))... ( -10.50, z-score =  -1.43, R)
>droYak2.chrX 17503220 60 + 21770863
AUCGUCACGAUGAUCAUUAUCAUCAUUUGCAGAGGUUACACUCAACUUCUUAGGAGCUUA
...((..(((((((....))))))......(((((((......)))))))..)..))... ( -12.20, z-score =  -1.99, R)
>droEre2.scaffold_4690 9178217 59 + 18748788
AUCGUCACGAUGAUCAUUAUCAUCAUUUGCAGAGGUUACACUCAACUUCUUAGGAGCUU-
...((..(((((((....))))))......(((((((......)))))))..)..))..- ( -12.20, z-score =  -2.05, R)
>consensus
AUCGUCACGAUGAUCAUUAUCAUCAUUUGCAGAGGUUACACUCAACUUCUUAGGAGCUUA
...((..(((((((....))))))......(((((((......)))))))..)..))... (-11.10 = -11.30 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 8

Location 18,896,917 – 18,896,977
Length 60
Sequences 5
Columns 60
Reading direction reverse
Mean pairwise identity 98.67
Shannon entropy 0.02406
G+C content 0.38130
Mean single sequence MFE -10.80
Consensus MFE -10.80
Energy contribution -10.80
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -1.38
Structure conservation index 1.00
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.99
SVM RNA-class probability 0.868929
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chrX 18896917 60 - 22422827
UAAGCUCCUAAGAAGUUGAGUGUAACCUCUGCAAAUGAUGAUAAUGAUCAUCGUGACGAU
..............((.(((......))).))..((((((((....))))))))...... ( -10.80, z-score =  -1.34, R)
>droSim1.chrX 14602858 60 - 17042790
UAAGCUCCUAAGAAGUUGAGUGUAACCUCUGCAAAUGAUGAUAAUGAUCAUCGUGACGAU
..............((.(((......))).))..((((((((....))))))))...... ( -10.80, z-score =  -1.34, R)
>droSec1.super_8 1191350 60 - 3762037
UAAGCUCCUAAUAAGUUGAGUGUAACCUCUGCAAAUGAUGAUAAUGAUCAUCGUGACGAU
..............((.(((......))).))..((((((((....))))))))...... ( -10.80, z-score =  -1.58, R)
>droYak2.chrX 17503220 60 - 21770863
UAAGCUCCUAAGAAGUUGAGUGUAACCUCUGCAAAUGAUGAUAAUGAUCAUCGUGACGAU
..............((.(((......))).))..((((((((....))))))))...... ( -10.80, z-score =  -1.34, R)
>droEre2.scaffold_4690 9178217 59 - 18748788
-AAGCUCCUAAGAAGUUGAGUGUAACCUCUGCAAAUGAUGAUAAUGAUCAUCGUGACGAU
-.............((.(((......))).))..((((((((....))))))))...... ( -10.80, z-score =  -1.29, R)
>consensus
UAAGCUCCUAAGAAGUUGAGUGUAACCUCUGCAAAUGAUGAUAAUGAUCAUCGUGACGAU
..............((.(((......))).))..((((((((....))))))))...... (-10.80 = -10.80 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:58:43 2011