| Sequence ID | dm3.chrX |
|---|---|
| Location | 18,894,625 – 18,894,724 |
| Length | 99 |
| Max. P | 0.607188 |
| Location | 18,894,625 – 18,894,724 |
|---|---|
| Length | 99 |
| Sequences | 6 |
| Columns | 99 |
| Reading direction | reverse |
| Mean pairwise identity | 80.84 |
| Shannon entropy | 0.37286 |
| G+C content | 0.45488 |
| Mean single sequence MFE | -17.14 |
| Consensus MFE | -11.29 |
| Energy contribution | -11.35 |
| Covariance contribution | 0.06 |
| Combinations/Pair | 1.18 |
| Mean z-score | -1.41 |
| Structure conservation index | 0.66 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.24 |
| SVM RNA-class probability | 0.607188 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 18894625 99 - 22422827 GCUAGUUCGCACUUGAAAUUAGUUUCCGAGUGCGUGACAAAGUUUUCCAGCCCAAAAUCCAUUUGCCAACACAUCUCCCUUUGCAAUUUCCUUAGACCG .(((((((((((((((((....))).)))))))).)))........................((((................))))......))).... ( -14.49, z-score = -0.83, R) >droSim1.chrX 14600363 99 - 17042790 GCUAGUUCGCACUUGAAAUUAGUUUCCGAGUGCGUGACAAAGUUUUCCAGCCCAAAAUCCAUUUGCCAACACAUCUCCCUUUGCAAUUUCCUUAGACCG .(((((((((((((((((....))).)))))))).)))........................((((................))))......))).... ( -14.49, z-score = -0.83, R) >droSec1.super_8 1189126 99 - 3762037 GCUAGUUCGCACUUGAUAUUAGUUUCCGAGUGCGUGACAAAGUUUUCCAGCCCAAAAUCCAUUUGCCAACACAUCUCCCUUUGCAAUUUCCUUAGACCG .((((((((((((((...........)))))))).)))........................((((................))))......))).... ( -13.99, z-score = -0.78, R) >droYak2.chrX 17500677 87 - 21770863 GCUAGUUCGUACUUGAAAUUAGUUUUCGAGUGCGUGACAAAGUUUUCCAGCCCAAAAUC------------CAUCUCCCUUUGCAAUUUUCUUAGCCCG (((((..(((((((((((.....)))))))))))((.(((((.................------------.......)))))))......)))))... ( -18.86, z-score = -3.58, R) >droEre2.scaffold_4690 9176170 99 - 18748788 GCUAGUUCGCACUUGAAAUUAGUUUCCGAGUGCGUGACAAAGUUUUGCAGCCCAAAAUCCAUUUGCCAACACAUCUCCCUUUGCUGUUUCCUUAGCCCG ((((((((((((((((((....))).)))))))).)))........(((((...............................))))).....))))... ( -19.88, z-score = -1.81, R) >droAna3.scaffold_13047 1776121 83 - 1816235 GCCACUUCGCACUUCAAAUGAGUUGCCAAGUGCGUGACAAAGUU------CUCAACAGCUCUUUG---GAUGGUAUCCCUUCCCUGCUGGCU------- (((((((.(((.(((....))).))).))))).)).........------.....((((.....(---((.((....)).)))..))))...------- ( -21.10, z-score = -0.64, R) >consensus GCUAGUUCGCACUUGAAAUUAGUUUCCGAGUGCGUGACAAAGUUUUCCAGCCCAAAAUCCAUUUGCCAACACAUCUCCCUUUGCAAUUUCCUUAGACCG ....(((((((((((...........)))))))).)))............................................................. (-11.29 = -11.35 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:58:42 2011