| Sequence ID | dm3.chrX |
|---|---|
| Location | 18,891,372 – 18,891,490 |
| Length | 118 |
| Max. P | 0.936613 |
| Location | 18,891,372 – 18,891,490 |
|---|---|
| Length | 118 |
| Sequences | 5 |
| Columns | 122 |
| Reading direction | forward |
| Mean pairwise identity | 86.82 |
| Shannon entropy | 0.23272 |
| G+C content | 0.38816 |
| Mean single sequence MFE | -33.30 |
| Consensus MFE | -24.90 |
| Energy contribution | -25.58 |
| Covariance contribution | 0.68 |
| Combinations/Pair | 1.09 |
| Mean z-score | -2.36 |
| Structure conservation index | 0.75 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.41 |
| SVM RNA-class probability | 0.936613 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 18891372 118 + 22422827 UAUAAAUGUGCACUACCCGCAAAACAUACAUAUAGAUAGAGUAUAGUGCGAUAUAUACAUAGAUGUGUGUGGCUCCUAGGAUGCGGAUAAAU----CCAUGUGGGUAAUAUUUGACAGAAGU ..(((((((....((((((((...(((((((((...((..(((((........))))).)).)))))))))((((....)).))(((....)----)).)))))))))))))))........ ( -32.60, z-score = -2.19, R) >droSim1.chrX 14597142 115 + 17042790 UAUAAAUGUGCACUACCCGCAAA-CAUACAUAUAGAUAGAGUAUAGUGCGAUAUA--CAUAGAUGUGUGUGGCUCCUAGGAUGCGGAUAAAU----CCAUGUGGGUAAUAUUUGACAGAAGU ..(((((((....((((((((..-(((((((((...((..(((((......))))--).)).)))))))))((((....)).))(((....)----)).)))))))))))))))........ ( -32.80, z-score = -2.32, R) >droSec1.super_8 1185889 115 + 3762037 UAUAAAUGUGCACUACCCGCAAA-CAUACAUAUAGAUAGAGUAUUGUGCGAUAUA--CAUAGAUGUGUGUGGCUCCUAGGAUGCGGAUAAAU----CCAUGUGGGUAAUAUUUGACAGAAGU ..(((((((....((((((((..-(((((((((..((.(.(((((....))))).--)))..)))))))))((((....)).))(((....)----)).)))))))))))))))........ ( -31.90, z-score = -1.91, R) >droYak2.chrX 17497279 117 + 21770863 UAUAAAUGUGCACUUCCCGCAAA-CACACACACACACAUGUACUACUAUAGUAUA----GAUGUGUGUGUGGCUCCUAGGAUGCGGAUAAAUAAAUCCAUGUGGGUAAUAUUUGACAGAAGU ..(((((((......((((((..-..((((((((((..(((((((...)))))))----..))))))))))((((....)).))((((......)))).))))))..)))))))........ ( -41.80, z-score = -4.39, R) >droEre2.scaffold_4690 9172926 105 + 18748788 UAUAAAUGUGCACUCCCCGCAAA-CACACAUAUAGUU------UAGUGCGAUAUA------GAUGUGUGUGGCUCCUAGGAUGCGGAUAAAU----CCAUGUGGGUAAUAUUUGACAGAAGU ..(((((((......((((((..-(((((((((....------((......))..------.)))))))))((((....)).))(((....)----)).))))))..)))))))........ ( -27.40, z-score = -0.98, R) >consensus UAUAAAUGUGCACUACCCGCAAA_CAUACAUAUAGAUAGAGUAUAGUGCGAUAUA__CAUAGAUGUGUGUGGCUCCUAGGAUGCGGAUAAAU____CCAUGUGGGUAAUAUUUGACAGAAGU ..(((((((....((((((((...(((((((((........((((......)))).......)))))))))((((....)).))...............)))))))))))))))........ (-24.90 = -25.58 + 0.68)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:58:38 2011