| Sequence ID | dm3.chrX |
|---|---|
| Location | 18,870,905 – 18,871,011 |
| Length | 106 |
| Max. P | 0.500000 |
| Location | 18,870,905 – 18,871,011 |
|---|---|
| Length | 106 |
| Sequences | 5 |
| Columns | 117 |
| Reading direction | forward |
| Mean pairwise identity | 88.37 |
| Shannon entropy | 0.19429 |
| G+C content | 0.37526 |
| Mean single sequence MFE | -20.74 |
| Consensus MFE | -18.62 |
| Energy contribution | -18.66 |
| Covariance contribution | 0.04 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.02 |
| Structure conservation index | 0.90 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.00 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>dm3.chrX 18870905 106 + 22422827 CGGUUGCAUUUAAGCGAUAAUUGAACGCUCUUUACCGGCAAAGAAAUUAUCAACUCUGAUUGCGCGAUGCGCAAUGCUUAUUUUCUUUCCUUAUUUUCCUUACUUU----------- .((..(.(..((((((((((((....(((.......))).....))))))).......(((((((...))))))))))))..).)...))................----------- ( -22.10, z-score = -1.49, R) >droSim1.chrX 14581008 102 + 17042790 CGGUUGCAUUUAAGCGAUAAUUGAACGCUCUUUACCGGCAAAGAAAUUAUCAACUCUGAUUGCGCGAUGCGCAAUGCUUAUUUUC----CUUAUUUUCCUUACUUU----------- .((.......((((((((((((....(((.......))).....))))))).......(((((((...))))))))))))....)----)................----------- ( -21.30, z-score = -1.27, R) >droSec1.super_8 1166021 102 + 3762037 CGGUUGCAUUUAAGCGAUAAUUGAACGCUCUUUACCGGCAAAGAAAUUAUCAACUCUGAUUGCACGAUGCGCAAUGCUUAUUUUC----CUUAUUUUCCUUACUUU----------- .((.......((((((((((((....(((.......))).....))))))).......(((((.......))))))))))....)----)................----------- ( -16.80, z-score = -0.28, R) >droYak2.chrX 17479337 94 + 21770863 CGGUUGCAUUUAAGCGAUAAUUGAACGCUCUUUACCGGCAAAGAAAUUAUCAACUCUGAUUGUGCGAUGCGCAAUGCUUAUUUUU---CCUUAUUUU-------------------- .((.......((((((((((((....(((.......))).....))))))).......(((((((...)))))))))))).....---)).......-------------------- ( -19.80, z-score = -0.84, R) >droEre2.scaffold_4690 9153507 113 + 18748788 CGGUUGCAUUUAAGCGAUAAUUGAACGCUCUUUACCGGCAAGGAAAUUAUCAACUCUGAUUGCGCGAUGCGCAAUGCUUAUUUGU----CUUAUUUUCCUUUUUUUCUCCUUAUUUU .....(((..((((((((((((....(((.......))).....))))))).......(((((((...))))))))))))..)))----............................ ( -23.70, z-score = -1.24, R) >consensus CGGUUGCAUUUAAGCGAUAAUUGAACGCUCUUUACCGGCAAAGAAAUUAUCAACUCUGAUUGCGCGAUGCGCAAUGCUUAUUUUC____CUUAUUUUCCUUACUUU___________ ..........((((((((((((....(((.......))).....))))))).......(((((((...))))))))))))..................................... (-18.62 = -18.66 + 0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:58:32 2011