| Sequence ID | dm3.chrX |
|---|---|
| Location | 18,860,039 – 18,860,114 |
| Length | 75 |
| Max. P | 0.569855 |
| Location | 18,860,039 – 18,860,114 |
|---|---|
| Length | 75 |
| Sequences | 7 |
| Columns | 81 |
| Reading direction | forward |
| Mean pairwise identity | 71.06 |
| Shannon entropy | 0.56896 |
| G+C content | 0.59535 |
| Mean single sequence MFE | -18.84 |
| Consensus MFE | -9.30 |
| Energy contribution | -9.86 |
| Covariance contribution | 0.55 |
| Combinations/Pair | 1.42 |
| Mean z-score | -1.04 |
| Structure conservation index | 0.49 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.16 |
| SVM RNA-class probability | 0.569855 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 18860039 75 + 22422827 CGCCCACAUU--UGGCUGAGUGUGAGUGACGUCGCC--CAGCCAAGCGA-GUCACACCCCAGAAACCGAGA-ACCCAGUCA ....((((((--(....))))))).(((((.((((.--.......))))-)))))................-......... ( -18.90, z-score = -1.23, R) >droYak2.chrX 17468361 75 + 21770863 CGCCCACAUU--UGGCUGAGUGUGAGUGACGUCGCC--CAGCCAAGCGA-GUCACACCCCAGAAAACCAGA-ACCCAGUCA ....((((((--(....))))))).(((((.((((.--.......))))-)))))................-......... ( -18.90, z-score = -1.56, R) >droEre2.scaffold_4690 9142871 75 + 18748788 CGCCCACAUU--UGGCGGAGUGUGAGUGACGUCGCC--CAGCCAAGCGA-GUCACACCCCAGAAAACCAGA-ACCCAGUCA ((((......--.))))((.((.(.(((((.((((.--.......))))-)))))......(.....)...-.).)).)). ( -18.90, z-score = -1.14, R) >droSec1.super_8 1155301 75 + 3762037 CGCCCACAUU--UGGCUGAGUGUGAGUGACGUCGCC--CAGCCAAGCGA-GUCACACCCCAGAAAACCAGA-ACCCAGUCA ....((((((--(....))))))).(((((.((((.--.......))))-)))))................-......... ( -18.90, z-score = -1.56, R) >droSim1.chrX 14569641 75 + 17042790 CGCCCACAUU--UGGCUGAGUGUGAGUGACGUCGCC--CAGCCAAGCGA-GUCACACCCCAGAAAACCAGA-ACCCAGUCA ....((((((--(....))))))).(((((.((((.--.......))))-)))))................-......... ( -18.90, z-score = -1.56, R) >dp4.chrXL_group1e 10531007 61 + 12523060 CGCCCACAUU-UUGGCCUCAGC--GACGACGAUGACGACGUCUGAGUGACGUUGGCUCCAAUCC----------------- .(((......-..))).(((.(--(....)).)))(((((((.....)))))))..........----------------- ( -14.50, z-score = 0.19, R) >droGri2.scaffold_14853 5224329 81 + 10151454 CGCCCACAUUGCCGGCGACAACUGAAUGACGACUUUGGCCCCUAUCCCAAGCUGGCACCCAGGCAGCCAGUCAGCCAGUCA ((((.........))))...((((..((((....((((........))))((((.(.....).))))..))))..)))).. ( -22.90, z-score = -0.41, R) >consensus CGCCCACAUU__UGGCUGAGUGUGAGUGACGUCGCC__CAGCCAAGCGA_GUCACACCCCAGAAAACCAGA_ACCCAGUCA .(((.........))).........(((((.((((..........)))).))))).......................... ( -9.30 = -9.86 + 0.55)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:58:30 2011