| Sequence ID | dm3.chr2L |
|---|---|
| Location | 1,065,897 – 1,065,990 |
| Length | 93 |
| Max. P | 0.795971 |
| Location | 1,065,897 – 1,065,990 |
|---|---|
| Length | 93 |
| Sequences | 5 |
| Columns | 95 |
| Reading direction | reverse |
| Mean pairwise identity | 75.27 |
| Shannon entropy | 0.45554 |
| G+C content | 0.40418 |
| Mean single sequence MFE | -17.39 |
| Consensus MFE | -9.50 |
| Energy contribution | -9.66 |
| Covariance contribution | 0.16 |
| Combinations/Pair | 1.10 |
| Mean z-score | -1.63 |
| Structure conservation index | 0.55 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.72 |
| SVM RNA-class probability | 0.795971 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 1065897 93 - 23011544 GCGGUUUCAAGUUGUGUCCUUAA--GAUACAUAAUCGUUACUUAGCAGUUCGAUCUCCUUUCUCCUUGCAUAACCUCUUGCUUUUCGAAAGGAAU ((((((......((((((.....--)))))).)))))).................(((((((.....(((........))).....))))))).. ( -19.70, z-score = -1.82, R) >droYak2.chr2L 1042120 95 - 22324452 GUUGUUUUUAUCUGAGUACCAAACCUUUCUUUAAUGCUUAUACUGGAGCUCGAUCUCCUUUCUCCUUGCAUAACCUCUUGUUUUUCGAAAGGAAU .........(((.((((.(((......................))).))))))).(((((((.....(((........))).....))))))).. ( -16.35, z-score = -1.44, R) >droEre2.scaffold_4929 1107575 75 - 26641161 ---------------GUUGUUUA--UCUGAAUAA-CAUUGCC--AGAGCUCGCCCGCCUUUCUCCUUGCAUAACCUCUUGUUUUUCGAAAGGAAU ---------------(((((((.--...))))))-)......--............((((((.....(((........))).....))))))... ( -12.80, z-score = -0.77, R) >droSec1.super_14 1019327 93 - 2068291 GUGCUUUCACGUUGUGUCCUUAA--GAUGCAUAAUCGUUACUUUGCAGCUCGAUCUCCUUUCUCCUUGCUUAACCUCUUGCUUUUCGAAAGGAAU .(((....(((.((((((.....--))))))....)))......)))........(((((((.....((..........)).....))))))).. ( -17.50, z-score = -1.27, R) >droSim1.chr2L 1036590 93 - 22036055 GUGCUUUCACGUUGUGUCCUUAA--GAUACAUAAUCGUUACUUUGCAGCUCGAUCUCCUUUCUCCUUGCAUAACCUCUUGCUUUUCGAAAGGAAU .(((....(((.((((((.....--))))))....)))......)))........(((((((.....(((........))).....))))))).. ( -20.60, z-score = -2.83, R) >consensus GUGCUUUCAAGUUGUGUCCUUAA__GAUACAUAAUCGUUACUUUGCAGCUCGAUCUCCUUUCUCCUUGCAUAACCUCUUGCUUUUCGAAAGGAAU .......................................................(((((((.....(((........))).....))))))).. ( -9.50 = -9.66 + 0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:07:40 2011