| Sequence ID | dm3.chrX |
|---|---|
| Location | 18,849,416 – 18,849,498 |
| Length | 82 |
| Max. P | 0.789750 |
| Location | 18,849,416 – 18,849,498 |
|---|---|
| Length | 82 |
| Sequences | 6 |
| Columns | 82 |
| Reading direction | reverse |
| Mean pairwise identity | 70.51 |
| Shannon entropy | 0.55187 |
| G+C content | 0.41766 |
| Mean single sequence MFE | -21.63 |
| Consensus MFE | -8.58 |
| Energy contribution | -9.75 |
| Covariance contribution | 1.17 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.83 |
| Structure conservation index | 0.40 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.70 |
| SVM RNA-class probability | 0.789750 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 18849416 82 - 22422827 GUGAAAAAUGGGCGGGGUAAAUCACAAUGAUAAUUGAGGUUAACCCCAAAAAUGCCCUUUUUUCCAUUCGGCGCUGCAAAGA (.((((((.(((((((((.((((.((((....)))).)))).)))))......)))).)))))))................. ( -25.40, z-score = -2.14, R) >droSec1.super_8 1153451 81 - 3762037 GUGGAAAAUGGGCGGGGAAAAUCACAAUGAUAAUUGAGGUUAACCCCAAAAAUGCCC-UUUUUCCAUUCGGCGCUGCAAAGA ((((((((.((((((((..((((.((((....)))).))))..))))......))))-.))))))))............... ( -27.10, z-score = -2.45, R) >droYak2.chrX 17466363 80 - 21770863 GUGAAAAAUGGGCGGGGAAAAUCACAAUGAUAAUUGAGGUUAACCCCAAAAUUGCC--CUUUUCCAUUGGGCAAUGCAAAGA ...........((((((..((((.((((....)))).))))..))))...((((((--(.........)))))))))..... ( -25.50, z-score = -2.22, R) >droEre2.scaffold_4690 9140933 68 - 18748788 -----------GGGGGGAAAAUCACAAUGAUAAUUGAGGUUAACCCCAAAAGUGA---CCUUUCCAUUGGCCGAUGCAAAGA -----------.((((...((((.((((....)))).))))..))))........---.((((.((((....)))).)))). ( -17.30, z-score = -0.66, R) >dp4.chrXL_group1e 10528166 65 - 12523060 -------UUAAAAAAAAAAAAUCAGUAC-AUAAUUGAGGUUAA-GCCAACAAUGC---UCUUUCCGGGCCGUAGCGA----- -------..............(((((..-...)))))((....-.))......((---((.....))))........----- ( -7.40, z-score = 0.75, R) >droSim1.chrX 14567795 68 - 17042790 GUGGAAAAUGGGCGGGGAAAAUCACAAUGAUAAUUGAGGUUAACCCCAAAAAUGCCC-UUUUUCCAUUC------------- ((((((((.((((((((..((((.((((....)))).))))..))))......))))-.))))))))..------------- ( -27.10, z-score = -4.23, R) >consensus GUG_AAAAUGGGCGGGGAAAAUCACAAUGAUAAUUGAGGUUAACCCCAAAAAUGCC__UUUUUCCAUUCGGCGAUGCAAAGA .............((((..((((.((((....)))).))))..))))................................... ( -8.58 = -9.75 + 1.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:58:27 2011