| Sequence ID | dm3.chrX |
|---|---|
| Location | 18,830,136 – 18,830,236 |
| Length | 100 |
| Max. P | 0.864506 |
| Location | 18,830,136 – 18,830,236 |
|---|---|
| Length | 100 |
| Sequences | 5 |
| Columns | 100 |
| Reading direction | reverse |
| Mean pairwise identity | 90.89 |
| Shannon entropy | 0.16114 |
| G+C content | 0.30064 |
| Mean single sequence MFE | -19.60 |
| Consensus MFE | -12.97 |
| Energy contribution | -14.49 |
| Covariance contribution | 1.52 |
| Combinations/Pair | 1.08 |
| Mean z-score | -2.78 |
| Structure conservation index | 0.66 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.97 |
| SVM RNA-class probability | 0.864506 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 18830136 100 - 22422827 UUUUUUUCAUCUUCACUUUAAAACUUUAGAAAUUAACACUUUUUGUGAAGAAGAAUCCAGUUUCGCUACGGCCUAGAAUUUUAAUUCUAUUCAAAACUAA .....(((.(((((((...........(....)...........))))))).)))...(((((.((....)).((((((....))))))....))))).. ( -17.25, z-score = -2.41, R) >droSim1.chrX 14556156 98 - 17042790 --UCUUUCUUCUUCACUUUAAAACUUCAGAAAUUAACACUUUUUGUGAAGGAGAAUCCAGUUUGGCUACGGCCUAGAAUUUUAAUUCUAUUCAAAACUAA --...(((((((((((............................)))))))))))...((((((((....)))((((((....))))))....))))).. ( -24.39, z-score = -3.97, R) >droSec1.super_8 1133335 98 - 3762037 --UUUUUCUUCUUCACUUUAAAACUUCAGAAAUUAACACUUUUUGUGAAGGAGAAUCCAGUUUGGCUACGGCCUAGAAUUUUAAUUCUAUUCAAAACUAA --...(((((((((((............................)))))))))))...((((((((....)))((((((....))))))....))))).. ( -24.39, z-score = -4.09, R) >droEre2.scaffold_4690 9122475 91 - 18748788 ------UGUUCUUCACUUUAAAACUUAAGAAAUUAACACUUUUUGUG---GAGAAUCCAGUUUCGCUCCGGCCUAGAAUUUGAAUUCUAUUCAAAACUAA ------.(((((((((........((((....))))........)))---))))))..(((((.((....)).((((((....))))))....))))).. ( -16.59, z-score = -1.63, R) >droYak2.chrX 17447377 96 - 21770863 -CUUUUUUUUCUCCACUUUAAAACUUCAGAAAUUAACACUUUUUGUG---GAGAAUCCAGUUUCGCUCCGGCCUAGAAUUUUAAUUCUAUUCAAAACUAA -.......((((((((............................)))---)))))...(((((.((....)).((((((....))))))....))))).. ( -15.39, z-score = -1.80, R) >consensus __UUUUUCUUCUUCACUUUAAAACUUCAGAAAUUAACACUUUUUGUGAAGGAGAAUCCAGUUUCGCUACGGCCUAGAAUUUUAAUUCUAUUCAAAACUAA .....(((((((((((............................)))))))))))...(((((.((....)).((((((....))))))....))))).. (-12.97 = -14.49 + 1.52)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:58:25 2011