| Sequence ID | dm3.chrX |
|---|---|
| Location | 18,827,715 – 18,827,831 |
| Length | 116 |
| Max. P | 0.856845 |
| Location | 18,827,715 – 18,827,831 |
|---|---|
| Length | 116 |
| Sequences | 5 |
| Columns | 126 |
| Reading direction | reverse |
| Mean pairwise identity | 70.20 |
| Shannon entropy | 0.52443 |
| G+C content | 0.38798 |
| Mean single sequence MFE | -27.34 |
| Consensus MFE | -14.54 |
| Energy contribution | -13.86 |
| Covariance contribution | -0.68 |
| Combinations/Pair | 1.65 |
| Mean z-score | -1.47 |
| Structure conservation index | 0.53 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.94 |
| SVM RNA-class probability | 0.856845 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 18827715 116 - 22422827 -----CAUUUUUUUUUUUUUGUCCGCUUUUCUCCAGCGA-AGCGCGCAGAGAA-AAACUUUGCCACA--CACACAAGACACAAAGCAAUUUGUCGAUUAUC-AAAAGGGUGGAGGAAAAUUCUAAA -----......(((((((((((.((((((.(....).))-)))).))))))))-)))(((..((...--..........(((((....)))))........-.....))..)))............ ( -28.57, z-score = -1.98, R) >droEre2.scaffold_4690 9119804 106 - 18748788 ------------AUUUUUUUCUCCGCUUUUCUCCAGCGA-AGCGCGCAGAGAA-AA--CUUGC--CA--CACACAAGACUCAAAGCAAUUUGUCGAUUAUCAAAAAGGGCGGAGGGAAAUUCUAAA ------------...(((..(((((((((((((..(((.-....))).)))))-).--((((.--..--....))))...((((....))))...............)))))))..)))....... ( -28.40, z-score = -1.88, R) >droYak2.chrX 17444687 120 - 21770863 AUUUUUUUGUUUUAUUUUUCCAGCGCGUUUCUCCAGCGA-AGCGUGCAGAGAA-AA-CUUUGCCACA--CACACAAAACACAAAGCAAUUUGUCGAUUAUC-AAAAGCGUGGAGAGAAAUUCUAAA ..............((((((((.((((((((......))-)))((((((((..-..-))))).))).--..........(((((....)))))........-....)))))))))))......... ( -28.20, z-score = -1.82, R) >droSim1.chrX 14553401 115 - 17042790 -----CACUUUUUUUUUUUC-UCCGCUUUUCUCCAGCGA-AGCGCGCAGAGAA-AAACUUUGCCACA--CACACAAAACACAAAGCAAUUUGUCGAUUAUC-AAAAGGGUGGAGGGAAAUUCUAAA -----.........(((..(-(((((((((......(((-.(.(.((((((..-...))))))).).--...........((((....)))))))......-..))))))))))..)))....... ( -27.44, z-score = -1.96, R) >droWil1.scaffold_181096 8060701 122 - 12416693 ---CAUUCAUUUUUUUGUUUUUUGGUUUUUUGAGGGUGAGAGUACUUAGCCAACCAUGUCAAUCGCAAUCAGACAAGUCAAAAACUUGGUU-UUGACCGUCAAAACAAUUUGUCGAGAAUUCUGAA ---.((((......(((.....(((((..(((((..(....)..)))))..)))))...)))((((((.....(((((.....)))))(((-(((.....))))))...))).)))))))...... ( -24.10, z-score = 0.30, R) >consensus _____CACUUUUUUUUUUUUCUCCGCUUUUCUCCAGCGA_AGCGCGCAGAGAA_AA_CUUUGCCACA__CACACAAGACACAAAGCAAUUUGUCGAUUAUC_AAAAGGGUGGAGGGAAAUUCUAAA ...............(((((.(((((((((.....(((....)))((((((......)))))).........................................))))))))).)))))....... (-14.54 = -13.86 + -0.68)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:58:24 2011