| Sequence ID | dm3.chrX |
|---|---|
| Location | 18,816,301 – 18,816,393 |
| Length | 92 |
| Max. P | 0.852583 |
| Location | 18,816,301 – 18,816,393 |
|---|---|
| Length | 92 |
| Sequences | 5 |
| Columns | 113 |
| Reading direction | reverse |
| Mean pairwise identity | 76.35 |
| Shannon entropy | 0.37903 |
| G+C content | 0.50256 |
| Mean single sequence MFE | -23.50 |
| Consensus MFE | -15.58 |
| Energy contribution | -15.98 |
| Covariance contribution | 0.40 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.73 |
| Structure conservation index | 0.66 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.92 |
| SVM RNA-class probability | 0.852583 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 18816301 92 - 22422827 UUGGCUUAUUCACUUGCGAUCGCUAUCGUGGCUGCUGUGAUCUUGGCCUGGUUGUCAAGUUCUAAUCCCCCGACUCGAAAAACCAAAUACUG--------------------- ..((((...((((..(((..(((....)))..))).))))....))))(((((.((.((((..........)))).))..))))).......--------------------- ( -24.30, z-score = -2.53, R) >droSim1.chrX 14542283 90 - 17042790 CUGGCUUAUUCACUUGCGAUCGCUAUCGUGGCUGCUGUGAUCUUGGCCUGGUUGUCAAGUUCUAACCCC--UACUCCACAAACCAAAUUCUG--------------------- ..((((...((((..(((..(((....)))..))).))))....))))(((((((..(((.........--.)))..)).))))).......--------------------- ( -23.80, z-score = -2.92, R) >droSec1.super_8 1119456 90 - 3762037 UUGGCUUAUUCACUUGCGAUCGCUAUCGUGGCUGCUGUGAUCUUGGCCUGCUUGUCAAGUUCUAACCCC--GACUCCACAAACCAAAUUCUG--------------------- ..((((...((((..(((..(((....)))..))).))))....))))...((((..((((........--))))..))))...........--------------------- ( -21.50, z-score = -2.00, R) >droYak2.chrX 17433850 113 - 21770863 UUGGCUUAUUCACUUGCGAUCGGUAUCGUGGUUGCUGUGAUCUUGGCCUGGUUGUCAAGUUCCUCCCCACUUCCCUCACCCCCCUCCCCCCAAACUCCAAAAAUCAAAUACUG ..((((...((((..(((((((......))))))).))))....)))).(((.(..((((........))))..)..)))................................. ( -20.70, z-score = -0.64, R) >droEre2.scaffold_4690 9108555 92 - 18748788 UUGGCUUAUUCACUUGCGAUCGGUAUCGUGGCUGCUGUGAUCUUGGCCUGGUUGUUAGGCCCCCACCCCCUGACGGCAAAAGCCAAAUUCUG--------------------- (((((((......(..((((....))))..).((((((......((((((.....))))))..((.....)))))))).)))))))......--------------------- ( -27.20, z-score = -0.58, R) >consensus UUGGCUUAUUCACUUGCGAUCGCUAUCGUGGCUGCUGUGAUCUUGGCCUGGUUGUCAAGUUCUAACCCCC_GACUCCACAAACCAAAUUCUG_____________________ ..((((...((((..(((..(((....)))..))).))))....))))................................................................. (-15.58 = -15.98 + 0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:58:23 2011