| Sequence ID | dm3.chrX |
|---|---|
| Location | 18,814,001 – 18,814,153 |
| Length | 152 |
| Max. P | 0.575747 |
| Location | 18,814,001 – 18,814,153 |
|---|---|
| Length | 152 |
| Sequences | 5 |
| Columns | 153 |
| Reading direction | reverse |
| Mean pairwise identity | 73.31 |
| Shannon entropy | 0.45658 |
| G+C content | 0.58837 |
| Mean single sequence MFE | -51.50 |
| Consensus MFE | -21.62 |
| Energy contribution | -21.06 |
| Covariance contribution | -0.56 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.93 |
| Structure conservation index | 0.42 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.17 |
| SVM RNA-class probability | 0.575747 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 18814001 152 - 22422827 GCGAGAUUCGUGGCUCAGAAAUGA-GGAGUGAUGGCGGUAGUGGAGUGGCAAUACAUGGAGGGAUCGCCAGAAUGUGACCAUCGCCAUCACCUCCUCCUCCUCCCUUCUCCCUGUUCCCGCCACACCCACUUAUUCCUAGAUGCCAUUCGCCC ((((.....(((((((((.(((((-((.(((.(((((((((.((((.((........((((((((.((....(((....))).)).))).)))))........))..)))))))...))))))))).).)))))).)).)).))))))))).. ( -54.49, z-score = -2.03, R) >droSec1.super_8 1116923 138 - 3762037 GCGAGAUUCGUGGCUCAGAAAAGA-GGAGUGAUGGCGACGGGGAGG-GGCAGUACAUGGAUGGAUCGCCAGAAUGUGACCAAUUCCAAC-------------CGCUCCUCCCUACCCCUGCCACACCCACUUAUUCCUAGAUGCCACUCGCCC ((((.....(((((((.((((((.-((.(((.(((((..(((((((-(((.((...(((((((.((((......)))))))..))))))-------------.)))))))))).....)))))))))).))).)))...)).))))))))).. ( -57.70, z-score = -3.84, R) >droSim1.chrX 14538999 124 - 17042790 GCGAGAUUCGUGGCUCAGAAAAGA---------------GGGGAUG-GGCAAUACAUGGAUGGAUCGCCAGAAUGUGACCAAUUCCAAC-------------CGCUCCUCCCUACCCCUGCCACACCCACUUAUUCCUAGAUGCCAUUCGCCC ((((.....(((((((((.((.((---------------((((.((-((((......((..(((.((...((((.......))))....-------------)).)))..))......)))).))))).))).)).)).)).))))))))).. ( -36.20, z-score = -1.03, R) >droYak2.chrX 17431424 128 - 21770863 GCGAGAUUCGUGGCUCAGAAAGCGCCGAUUGAUGGCGAGGGGAAUGGUGAUGGAGGGGGGGGGAUCGCCAGAAUGUGACCAACCCCUGC-------------------------CCCCUGCCACGCCCACUUAUUCCUAGAUGCCAUUCGCCC ((((.....(((((((......(((((.....)))))..((((((((((.(((((((((((((.((((......))))....))))..)-------------------------))))).))))))).....)))))).)).))))))))).. ( -53.80, z-score = -1.44, R) >droEre2.scaffold_4690 9106194 130 - 18748788 GCGAGUUUCGUGGCUCAGAGUGCA-GGC------GAGGGGGUGGGG-GGGGAUACAUGGAGGGAUCGCCAGAAUGUGACCAACCCCAUC-------------CCCAACCCCU--CCCCCGCCACACCCACUUAUUCCUAGAUGCCAUUCGCCC ((((.....(((((((((((((..-(((------(.(((((.((((-((((((....((..((.((((......))))))..))..)))-------------)))..)))))--)))))))).....)))).....)).)).))))))))).. ( -55.30, z-score = -1.31, R) >consensus GCGAGAUUCGUGGCUCAGAAAAGA_GGA_UGAUGGCGAGGGGGAGG_GGCAAUACAUGGAGGGAUCGCCAGAAUGUGACCAACCCCAAC_____________CCCUCCUCCCU_CCCCUGCCACACCCACUUAUUCCUAGAUGCCAUUCGCCC (((((....(((((.................................(......).((((.((.((((......))))))...))))................................))))).....((.......))......))))).. (-21.62 = -21.06 + -0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:58:22 2011