Locus 15392

Sequence ID	dm3.chrX
Location	18,808,455 – 18,808,513
Length	58
Max. P	0.514187

overview

Window 1

Location	18,808,455 – 18,808,513
Length	58
Sequences	3
Columns	58
Reading direction	reverse
Mean pairwise identity	93.10
Shannon entropy	0.09500
G+C content	0.37931
Mean single sequence MFE	-8.23
Consensus MFE	-7.90
Energy contribution	-7.90
Covariance contribution	-0.00
Combinations/Pair	1.00
Mean z-score	-0.93
Structure conservation index	0.96
Background model	dinucleotide
Decision model	sequence based alignment quality
SVM decision value	0.04
SVM RNA-class probability	0.514187
Prediction	RNA

Download alignment: ClustalW | MAF

>dm3.chrX 18808455 58 - 22422827
ACUAGCCUAAGCUUAAAGUUCCAUAUCGUUCGAAAUCGUAUUUUCGUGCAGCAGAACU
...(((....)))...(((((......((.(((((......))))).))....))))) (  -8.30, z-score =  -0.42, R)
>droSec1.super_8 1111632 58 - 3762037
ACUAGCCUAAGCUCAAAGUUCCAUAUUGUUCGAAAUAGUAUUUUCGUCCUGAAGAACU
...(((....)))...(((((......(..(((((......)))))..)....))))) (  -8.30, z-score =  -1.05, R)
>droSim1.chrX 14533638 58 - 17042790
ACUAGCCUAAGCUCAAAGUUCCAUAUCGUUCGAAAUAGUAUUUUCGUCCAGAAGAACU
...(((....)))...(((((....(((..(((((......)))))..).)).))))) (  -8.10, z-score =  -1.30, R)
>consensus
ACUAGCCUAAGCUCAAAGUUCCAUAUCGUUCGAAAUAGUAUUUUCGUCCAGAAGAACU
...(((....)))...(((((......(..(((((......)))))..)....))))) ( -7.90 =  -7.90 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:58:21 2011