| Sequence ID | dm3.chrX |
|---|---|
| Location | 18,796,058 – 18,796,145 |
| Length | 87 |
| Max. P | 0.871218 |
| Location | 18,796,058 – 18,796,145 |
|---|---|
| Length | 87 |
| Sequences | 3 |
| Columns | 87 |
| Reading direction | reverse |
| Mean pairwise identity | 90.23 |
| Shannon entropy | 0.13432 |
| G+C content | 0.33899 |
| Mean single sequence MFE | -16.13 |
| Consensus MFE | -15.51 |
| Energy contribution | -15.07 |
| Covariance contribution | -0.44 |
| Combinations/Pair | 1.10 |
| Mean z-score | -1.41 |
| Structure conservation index | 0.96 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.00 |
| SVM RNA-class probability | 0.871218 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 18796058 87 - 22422827 AAAUGAAACACUUUAGAUUCGAUCUUGUACUAGUCGAAAGUUGUGCAGUAAGAAUCCCUUAAGAAGUAAGUAUGCAUUCAUAUGUAU ..(((((...(((..(((((....((((((....(....)..))))))...)))))....)))..(((....))).)))))...... ( -15.60, z-score = -1.18, R) >droSim1.chrX 14521876 82 - 17042790 -----AAACACUUUAGGUUCGAUCUUGUACAAGUCGGAAGUUGUGCAGUAAGAAUCCCUUAAGAAGUAAAUAUGCAUUCAAAUGUAU -----.....(((.((((((....((((((((..(....)))))))))...)))..))).)))........((((((....)))))) ( -15.80, z-score = -1.41, R) >droSec1.super_8 1099011 82 - 3762037 -----AAACACUUUAGGUUCGAUUUUGUACCAGUCGGAAGUUGUGCAGUAAGAAUCCCUUAAGAAGUAAAUAUGCAUUCAUAUGCAU -----.....(((.((((((....((((((....(....)..))))))...)))..))).)))........((((((....)))))) ( -17.00, z-score = -1.65, R) >consensus _____AAACACUUUAGGUUCGAUCUUGUACAAGUCGGAAGUUGUGCAGUAAGAAUCCCUUAAGAAGUAAAUAUGCAUUCAUAUGUAU ..........(((..(((((....((((((....(....)..))))))...)))))....)))........((((((....)))))) (-15.51 = -15.07 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:58:20 2011