| Sequence ID | dm3.chrX |
|---|---|
| Location | 18,795,818 – 18,795,918 |
| Length | 100 |
| Max. P | 0.863463 |
| Location | 18,795,818 – 18,795,918 |
|---|---|
| Length | 100 |
| Sequences | 6 |
| Columns | 101 |
| Reading direction | forward |
| Mean pairwise identity | 79.72 |
| Shannon entropy | 0.39208 |
| G+C content | 0.42882 |
| Mean single sequence MFE | -24.96 |
| Consensus MFE | -16.39 |
| Energy contribution | -18.03 |
| Covariance contribution | 1.64 |
| Combinations/Pair | 1.33 |
| Mean z-score | -1.69 |
| Structure conservation index | 0.66 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.97 |
| SVM RNA-class probability | 0.863463 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 18795818 100 + 22422827 UAUUCCCAACAU-GUGGGUCGUUAAAUAACCAUCUUUGUCUGUGGCUUUUAUCAGGCGAUUAUCCUGGCAUUAACUCGCUUUUGGCGCCUACUUUUUUGGG ....(((((...-(((((.(((((((.........(((((((..........))))))).......(((........)))))))))))))))....))))) ( -26.50, z-score = -2.12, R) >droSim1.chrX 14521637 99 + 17042790 UAUUCCCAACAU-GUGGGUCGUUAAAUAACCAUCUUUGUCUGUGGCUUUUAUCAGGCGAUUAUCCUGGCAU-AACUCGCUUUUGGCGCCUACUUUUUUGGG ....(((((...-(((((.(((((((...((((........)))).........(((((((((......))-)).)))))))))))))))))....))))) ( -26.70, z-score = -2.15, R) >droSec1.super_8 1098771 100 + 3762037 UAUUCCCAACAU-GUGGGUCGUUAAAUAACCAUCUUUGCCUGUGGCUUUUAUCAGGCGAUUAUCCUGGCAUUAACUCGCUUUUGGCGCCUACUUUUUUGGG ....(((((...-(((((.(((((((.........(((((((..........))))))).......(((........)))))))))))))))....))))) ( -29.20, z-score = -2.64, R) >droYak2.chrX 17413373 100 + 21770863 UAUUCCCAACAU-GUGGGUCGUUAAAUAACCAUCUUUGUCUGUGGCUUUUAUGAGGCGAUUAUCCUGGCAUUAACUCGCUUUUGGCGCCUACUUUUUUGGG ....(((((...-(((((.(((((((..........((((.((.(((((...))))).))......))))..........))))))))))))....))))) ( -25.85, z-score = -1.59, R) >droEre2.scaffold_4690 9088333 99 + 18748788 UAUACCCAACAU-GUGGGUCGUUAAAUAACCAUCUUUGUCUAUGGCCUUUAUGAGGCGAUUAUCCUGGCAUUAACUCGCUUUUGGCGCCUACUUUUUGGG- ....(((((...-(((((.(((((((..........((((.((.(((((...))))).))......))))..........))))))))))))...)))))- ( -29.35, z-score = -2.72, R) >droVir3.scaffold_12726 725263 94 + 2840439 CACACACACUUUCGUAUGUAUUCCCACAACAAUAACCAUAAUUUGCUGUCGU-AAGCAGUUUAGCAAACAUUUCCGCUGCAUUGGCGCGUAAUUU------ .(((.((......)).))).......................(((((((((.-..(((((...............)))))..))))).))))...------ ( -12.16, z-score = 1.08, R) >consensus UAUUCCCAACAU_GUGGGUCGUUAAAUAACCAUCUUUGUCUGUGGCUUUUAUCAGGCGAUUAUCCUGGCAUUAACUCGCUUUUGGCGCCUACUUUUUUGGG ....(((((....(((((.(((((((..........((((.((.((((.....)))).))......))))..........))))))))))))....))))) (-16.39 = -18.03 + 1.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:58:20 2011