Locus 15389

Sequence ID dm3.chrX
Location 18,792,619 – 18,792,739
Length 120
Max. P 0.799153
window21198

overview

Window 8

Location 18,792,619 – 18,792,739
Length 120
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 95.00
Shannon entropy 0.06887
G+C content 0.33611
Mean single sequence MFE -23.53
Consensus MFE -21.83
Energy contribution -21.61
Covariance contribution -0.22
Combinations/Pair 1.04
Mean z-score -1.61
Structure conservation index 0.93
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.73
SVM RNA-class probability 0.799153
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chrX 18792619 120 - 22422827
UCAACAUAAUAUUAAGUUAACAUGUGACCACUCUAUAAAGUACAUCACUUGAAAAUCACCUUUCUCCGAUUGGAAAAAAUUUGCAAAUCGGGGUCACCAUGUCAAUUAAACUGGCAUUUU
..............((((.((((((((((........((((.....))))((((......)))).(((((((.((.....)).).))))))))))).))))).))))............. ( -21.60, z-score =  -1.33, R)
>droSim1.chrX 14518067 120 - 17042790
UCAACAUAAUAUUAAGUUAACAUGUGACCACAUUUUGAAGUACAUCACUUGAAAGUCACCUUUCUCCGAUUGGAAAAAAUUAGCAAAUCGGGGUCACCAUGUCAAUUAAACUGGCAUUUU
..............((((.((((((((((..(((((.((((.....)))).))))).........((((((..............))))))))))).))))).))))............. ( -24.74, z-score =  -1.59, R)
>droSec1.super_8 1095566 120 - 3762037
UCAGCAUAAUAUUAAGUUAGCAUGUGACCACAUUUUAAAGUACAUCACUUGAAAAUCACCUUUCUCCGAUUGGAAAAAAUUAGCAAAUCGGGGUCACUAUGUCAAUUAAACUGGCAUUUU
...((.((((.....))))))..((((((..(((((.((((.....)))).))))).........((((((..............)))))))))))).((((((.......))))))... ( -24.24, z-score =  -1.91, R)
>consensus
UCAACAUAAUAUUAAGUUAACAUGUGACCACAUUUUAAAGUACAUCACUUGAAAAUCACCUUUCUCCGAUUGGAAAAAAUUAGCAAAUCGGGGUCACCAUGUCAAUUAAACUGGCAUUUU
..............((((.((((((((((........((((.....))))((((......)))).((((((..............)))))))))))).)))).))))............. (-21.83 = -21.61 +  -0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:58:19 2011