Locus 15386

Sequence ID dm3.chrX
Location 18,779,297 – 18,779,384
Length 87
Max. P 0.594549
window21194

overview

Window 4

Location 18,779,297 – 18,779,384
Length 87
Sequences 6
Columns 87
Reading direction forward
Mean pairwise identity 81.07
Shannon entropy 0.37318
G+C content 0.47398
Mean single sequence MFE -20.75
Consensus MFE -16.46
Energy contribution -16.72
Covariance contribution 0.26
Combinations/Pair 1.38
Mean z-score -0.96
Structure conservation index 0.79
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.21
SVM RNA-class probability 0.594549
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chrX 18779297 87 + 22422827
UCGGCAAGGCUGCGUCCAGUUGGAAUGGGCGCUUUUAUCUUCAACUUGGCCCAGGUCAUGUUCAUUCAUAUUUACUCUUGUUUUUCC
..(((((((..(((((((.......)))))))..........(((.((((....)))).))).............)))))))..... ( -21.90, z-score =  -1.23, R)
>droSim1.chrX 14505768 87 + 17042790
UCGGCAAGGCUGCGUCCAGUUGGAAUGGGCGCUUUUAUCUUCAACUUGGCCCAGGUCAUGUUCAUUCAUAUUUACUCUUGUUUUUCC
..(((((((..(((((((.......)))))))..........(((.((((....)))).))).............)))))))..... ( -21.90, z-score =  -1.23, R)
>droSec1.super_8 1081935 87 + 3762037
UCGGCAAGGCUGCGUCCAGUUGGAAUGGGCGCUUUUAUCUUCAACUUGGCCCAGGUCAUGUUCAUUCAUAUUUACUCUUGUUUUUCC
..(((((((..(((((((.......)))))))..........(((.((((....)))).))).............)))))))..... ( -21.90, z-score =  -1.23, R)
>droYak2.chrX 17396471 87 + 21770863
UCGGCAAGGCUGCGUCCAGUUGGAAUGGGCGCUUCUAUCUUCAACUUGGCCCAGGUCAUGUUCAUUCAUAUUUACUCGUGUUUUUCA
..((.(((((.(((((((.......)))))))..........(((.((((....)))).))).................))))))). ( -19.00, z-score =  -0.03, R)
>droEre2.scaffold_4690 9072068 86 + 18748788
UCAGCAAAACUGCGUCCAGUUGGAAUAGGCGCUUCUAUCUUCAACUUGGCCCAGGUCAUGUUCAUUCAUAUUUACUCUUGCUUUUU-
..(((((..(((.(((.((((((((((((....))))).))))))).))).)))...(((......)))........)))))....- ( -20.20, z-score =  -2.07, R)
>dp4.chrXR_group3a 1235320 87 + 1468910
UCCGCAGCGCUGCUCCCAGCUCAACUGGACGCAUAUAUCUCUCGCUCUCUCUGCAUGCUUCUCCCGCAAGGCUGGCUCUGUUUUUCC
...((((.(((((..((((.....))))..))...........((.......)).........((....))..))).))))...... ( -19.60, z-score =   0.06, R)
>consensus
UCGGCAAGGCUGCGUCCAGUUGGAAUGGGCGCUUUUAUCUUCAACUUGGCCCAGGUCAUGUUCAUUCAUAUUUACUCUUGUUUUUCC
..(((((((..(((((((.......)))))))..........(((.((((....)))).))).............)))))))..... (-16.46 = -16.72 +   0.26)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 01:58:16 2011